PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G401521_P02
Common NameZm.9836
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 334aa    MW: 35155 Da    PI: 9.3773
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G401521_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.12.6e-11211232122
                        ---SS-EEEEEEE--TT-SS-E CS
               WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                        ldDgy+WrKYGqK vk+s fpr
  GRMZM2G401521_P02 211 LDDGYRWRKYGQKAVKNSAFPR 232
                        59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-12197233IPR003657WRKY domain
SuperFamilySSF1182903.79E-9203233IPR003657WRKY domain
PROSITE profilePS5081112.518206232IPR003657WRKY domain
SMARTSM007742.4E-5211246IPR003657WRKY domain
PfamPF031062.6E-7212234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MPVVELWLLL PSAAPPVDLV ASNVCAPNAS HLPSPSLSHA PTRRQSQLPR SCTVHPPVTY  60
ISRGAGSLDL SPPARALFLS MENLPLLGGI RQQPNTQLAT ATCLAAPQPE QHACRDATTT  120
TSLVVPAMSF PPAAVDWASL LLPRSTSGGA NELESGGGIA ETVAGSSASA TTAGEGDNNK  180
TGKAGRGGGR GKKKASRPRF AFQTRSEDDV LDDGYRWRKY GQKAVKNSAF PRWIVSLSML  240
MHACMSLVLY MLASIVCCGN WKQRNVGMHA MQELLPVHAP HVRGEEAGAA AGQGHEHRGD  300
HVRGRAQPPV REAHGGAQPH PQAAPAPLAA PVLH
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G401521
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G401521_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560660.0EU956066.1 Zea mays clone 1556750 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGRMZM2G401521_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.18e-16WRKY DNA-binding protein 43