PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G399598_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 424aa    MW: 47798.1 Da    PI: 9.9072
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G399598_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.82.7e-081121451955
                AP2  19 IrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        Ir+p   +kr+r +lg+f taeeAa a+++ + +l+g
  GRMZM2G399598_P01 112 IREP---NKRTRLWLGSFATAEEAALAYDEVACRLYG 145
                        6666...347************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.1150.103.2E-6136IPR015422Pyridoxal phosphate-dependent transferase, major region, subdomain 2
PfamPF004643.7E-6238IPR001085Serine hydroxymethyltransferase
SMARTSM003802.2E-12108159IPR001471AP2/ERF domain
CDDcd000186.53E-17108155No hitNo description
SuperFamilySSF541716.08E-10112154IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-15112154IPR001471AP2/ERF domain
PROSITE profilePS5103212.418112153IPR001471AP2/ERF domain
PfamPF039141.0E-4310354IPR005612CCAAT-binding factor
PfamPF061022.5E-10355409IPR009292rRNA biogenesis protein RRP36
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000469Biological Processcleavage involved in rRNA processing
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016740Molecular Functiontransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MHASLTAKGY KVVSNGIDNH LVSVNLKNKE AKGTRAGLMG TTILAMISLH SRFSFLWLLW  60
TRAQHQGVST AAASTSVTGT TTQATSSSLQ TSQECTILLS LFLLLILVSE LIREPNKRTR  120
LWLGSFATAE EAALAYDEVA CRLYGPDAFL NLPHLRASAV SSTAAHQRLR WLAASARGAA  180
AVPAYDLLNL NAQHNVYNLL AHVPLMDFQK ESTFDMWILL VCLLKEKMTL SRKLKLKLKL  240
KFTKAWLSFL MLPLPLDVYK EQCFSYPMRS LAHCGMVLAL IHQNVIPSMS NPSILCDFLT  300
RSYDIGGVIS VMALSGLFIL MTQHGLEYRK FYEKLYALLT HVVFMAKHRS IFLQDKQLKS  360
HPPKNVESEI LCEHIKKERE AATAGKRPYY LKKSELRERK LMNKYNELKL YDSAIEFVIL  420
SIDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wlc_SU7e-13237354252360Noc4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.539951e-104cell culture| ear| embryo| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G399598
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G399598_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284071e-113KJ728407.1 Zea mays clone pUT6712 AP2-EREBP transcription factor (EREB124) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6ETL40.0A0A3L6ETL4_MAIZE; Dehydration-responsive element-binding protein 2E
STRINGGRMZM2G399598_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.12e-21ERF family protein