PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G399098_P01 | ||||||||
Common Name | LOC103639531, ZEAMMB73_408262 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 322aa MW: 34300.6 Da PI: 7.3715 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.8e-20 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p +kr+r +lg+f taeeAa a+++a+++l+g GRMZM2G399098_P01 27 EYRGVRQRT-WGKWVAEIREP---NKRTRLWLGSFATAEEAALAYDEAARRLYG 76 69****999.**********9...337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.07E-28 | 26 | 86 | No hit | No description |
Pfam | PF00847 | 7.1E-14 | 27 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.55 | 27 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-36 | 27 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-21 | 27 | 85 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-30 | 27 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MQSYGRKRAW KKGPTRGKGG PQNAACEYRG VRQRTWGKWV AEIREPNKRT RLWLGSFATA 60 EEAALAYDEA ARRLYGPDAF LNLPHLRASA VSSAAAHQRL RWLSASARGA AAVPAYGLLN 120 LNAQHNVRVI HQRLQELKNN GSPAKPPPSP SLRVSPSAPH KQLAPADHLP AVATTSPCSI 180 VVVTHVHAAP AMSCFHALEQ TVATVAMRTV DDAEPCEGGA CPPAADKPQI DLREFLQQIG 240 VLNTDDDGIT ATAKAAFHAA GDAAVSCFVS GNGDFDWDVL AADLNDIAGA HGGANGGVQM 300 DDLHEHAVDQ FGTCLPIPVW DV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-16 | 28 | 84 | 6 | 63 | ATERF1 |
3gcc_A | 1e-16 | 28 | 84 | 6 | 63 | ATERF1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 16916298 | 1e-118 | ||||
Expression Atlas | GRMZM2G399098 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G399098_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728407 | 0.0 | KJ728407.1 Zea mays clone pUT6712 AP2-EREBP transcription factor (EREB124) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008660493.1 | 0.0 | dehydration-responsive element-binding protein 2E | ||||
Swissprot | Q10R18 | 1e-113 | DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E | ||||
TrEMBL | K7W2R5 | 0.0 | K7W2R5_MAIZE; Putative AP2/EREBP transcription factor superfamily protein | ||||
STRING | GRMZM2G399098_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9575 | 29 | 39 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 7e-46 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G399098_P01 |
Entrez Gene | 103639531 |