PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G398506_P02 | ||||||||
Common Name | pco084191, WRKY1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 613aa MW: 65877 Da PI: 6.5431 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101 | 7e-32 | 230 | 287 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers d++++e++Y+g+Hnh+k GRMZM2G398506_P02 230 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSL-DGQITEVVYKGHHNHPK 287 8****************************************.***************85 PP | |||||||
2 | WRKY | 107.4 | 6.9e-34 | 403 | 461 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe GRMZM2G398506_P02 403 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHTGCPVRKHVERASHDPKSVITTYEGKHNHE 461 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.9E-28 | 220 | 288 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.525 | 224 | 288 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.76E-25 | 228 | 288 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.6E-35 | 229 | 287 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-24 | 230 | 286 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.1E-38 | 388 | 463 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-30 | 395 | 463 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.297 | 398 | 463 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.5E-40 | 403 | 462 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-26 | 404 | 461 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009961 | Biological Process | response to 1-aminocyclopropane-1-carboxylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MADSPNPSSG DLPAGAGCSP EKPVLADRRV SALAGAGARY KAMSPARLPI SREPCLTIPT 60 GFSPGALLES PVLLNNFKVE PSPTTGTLSM AANMNKSTHP DILPSPRDNS ADSGQEDGGS 120 REFEFKPHLN SQSSATAVNN QNHHDIPMQN HGSNHASPSS NLMTENKPLC SRESSHTANV 180 SSAPNQPVSI VCPSDNMPAE VGTSEMHLIN SSENAAQETQ TENVAEKSAE DGYNWRKYGQ 240 KHVKGSENPR SYYKCTHPNC EVKKLLERSL DGQITEVVYK GHHNHPKPQP NRRLAAGAVP 300 SSQAEERYDG VAPIEDKPSN IYSNLCNQAH SAGMVDNVPG PASDDDVDAG GGRPYPGDDS 360 NDDDDLDSKR RKMESAGIDA ALMGKPNREP RVVVQTVSEV DILDDGYRWR KYGQKVVKGN 420 PNPRSYYKCT HTGCPVRKHV ERASHDPKSV ITTYEGKHNH EVPASRNASH EMSAAPMKPV 480 VHPINSSMPG FGGMMRACDA RAFNNQYSQA AESDTISLDL GVGISPNHSD ATNQMQPSVP 540 EPMQYQMRHM APVYGSMGLP GMPVPAIPGN VVASSIYGSR EEKGNEGFTF KAAPLDRSAN 600 LCYSSAGNLV MGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-36 | 230 | 464 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-36 | 230 | 464 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.67118 | 0.0 | ear| endosperm| meristem| pericarp| pollen| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G398506 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Peak of expression 12 days after pollination. {ECO:0000269|PubMed:12953112}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in endosperm, but not in leaves. {ECO:0000269|PubMed:12953112}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00455 | DAP | Transfer from AT4G26640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G398506_P02 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054888 | 0.0 | BT054888.1 Zea mays full-length cDNA clone ZM_BFc0109P23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146223.1 | 0.0 | uncharacterized LOC100279793 | ||||
Swissprot | Q6VWJ6 | 0.0 | WRK46_HORVU; WRKY transcription factor SUSIBA2 | ||||
TrEMBL | B7ZZZ6 | 0.0 | B7ZZZ6_MAIZE; Putative WRKY transcription factor 20 | ||||
STRING | GRMZM2G398506_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6740 | 38 | 51 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 1e-121 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G398506_P02 |
Entrez Gene | 100279793 |