PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G398055_P01
Common NameLOC107305672, Zm.148525
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 312aa    MW: 31420 Da    PI: 7.741
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G398055_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.61.8e-3096149155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  GRMZM2G398055_P01  96 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 149
                        59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.05E-2093153IPR009057Homeodomain-like
PROSITE profilePS5129411.05993152IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-3095154IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-2497149IPR006447Myb domain, plants
PfamPF002491.2E-799148IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MREEEEASWF ARGEEQQLLR PDELMPLTQT LITPHLAVAF DITTHGAGGT GAAGGAGAGP  60
GAGGPDINGG GASSAAGSSG GGGGGGGDEP ARTLKRPRLV WTPQLHKRFV DAVAHLGIKN  120
AVPKTIMQLM SVDGLTRENV ASHLQKYRLY LKRMQGLGGG GGGGGGGGAG GSHSSGSGTD  180
AATEHLFATG PVPFLPPGHR APAAADSYPP FSPMGGAHHH QHHQIGHFHH PATRPLAHYG  240
GAAVGGFDHG FLSRVGPPAG PPGMHHRMVG GGAGMGMMAP ASFADEMDLG SRGGGGSGSR  300
RELTLFPTSG DH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A7e-3496152157Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.229750.0meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G398055
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269|PubMed:20331973}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G398055_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0865880.0BT086588.1 Zea mays full-length cDNA clone ZM_BFc0188H07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307691.10.0uncharacterized protein LOC107305672
SwissprotO222101e-52MYBC1_ARATH; Transcription factor MYBC1
TrEMBLC4J6Z10.0C4J6Z1_MAIZE; Homeodomain-like superfamily protein
TrEMBLK4JBW40.0K4JBW4_MAIZE; G2-like transcription factor (Fragment)
STRINGGRMZM2G398055_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Representative plantOGRP11571753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.11e-48G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]