PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G397755_P01
Common NameLOC103649622
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 469aa    MW: 49143 Da    PI: 6.3193
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G397755_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11250292855
                        HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         Er+RR+++N++f+ L+ +lP+ a      K +K +iL +A eY++sL+
  GRMZM2G397755_P01 250 SERKRREKLNDSFHALKAVLPPgA------KKDKTSILIRAREYVRSLE 292
                        6********************966......99999***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.84242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-15243308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.59E-12244296No hitNo description
Gene3DG3DSA:4.10.280.103.2E-12246290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-11248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-9250292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146865.79E-4283311No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-5291310No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDMDSSSSWL HGYATTNGFM CGGYAASPAE VQCVEDEQQQ FLISSQIQHH LNQISMRMNM  60
DDEAAAAVDM HDLLEDLDDP RRAGAGACSF PSSSSSSSLS LSLPASASLS CSPESSSPPH  120
ILGAATAPAS GGCNQQYPEV SSHVPLVPPP PTVLASYSNL HAPAAAPEET SPAARPTGGA  180
FKHYARHLGP TRTTPTKPGT CGQRMFKTAM SVLSKMHVAA RYSQQQYYYE AAAAEVAPPP  240
SVNQLQHMFS ERKRREKLND SFHALKAVLP PGAKKDKTSI LIRAREYVRS LEARVAELEE  300
KNKSLESRLA KDGSGCGDDH DSGSTTKVQV EISRAAANEE LCTLKIAVIR SPSPCNMTDV  360
VVRTLQCLKE QIGDGVSLVA MSTSGGGGGG AGPTTTTTGG KKGSPGDVLT LQIKSPGGTD  420
WEEEPVKDAV AKVVADALTT TPRPPPAAAA AATTVSSCFG EASQLTTSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250255ERKRRE
2251256RKRREK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G397755
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G397755_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673583.10.0putative transcription factor bHLH041
TrEMBLA0A1D6MHH80.0A0A1D6MHH8_MAIZE; Putative transcription factor bHLH041
STRINGGRMZM2G397755_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Representative plantOGRP10417410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-20bHLH family protein