PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G397616_P01
Common NameZEAMMB73_192746
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 243aa    MW: 25183.2 Da    PI: 8.281
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G397616_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.41.3e-20130164135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cgtt+TplWR+gp+g+k+LCnaCG+++rkk++
  GRMZM2G397616_P01 130 CASCGTTSTPLWRNGPRGPKSLCNACGIRFRKKER 164
                        ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-17124175IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-14127166No hitNo description
Gene3DG3DSA:3.30.50.102.5E-16128164IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.993129160IPR000679Zinc finger, GATA-type
CDDcd002022.53E-15129162No hitNo description
PROSITE patternPS003440130155IPR000679Zinc finger, GATA-type
PfamPF003202.6E-18130164IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006505anatomycentral spike of ear inflorescence
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAAASPAFSL FFPLPNTKAF QFDDDSHSSV TTCPSSPSSS SSSTGTVDCT LSLGTPSSRR  60
AAAKPRPPCL ALPSRSAVSC DVAAPADQSC CCRCCSCPGG RRPSPAAANK RAAAAHGHGQ  120
DPAPLVDHRC ASCGTTSTPL WRNGPRGPKS LCNACGIRFR KKERRAATGT TTADMDQGGC  180
YLAQRAQYGA ATSGRAYYGG GDGDIADAEA VPAQFLAWRP SVVEAAEFAA VWPEPATLFQ  240
YIN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.907292e-46ear| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G397616
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G397616_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9678506e-44EU967850.1 Zea mays clone 306547 GATA transcription factor 19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656064.11e-176GATA transcription factor 15
TrEMBLA0A1D6FL141e-174A0A1D6FL14_MAIZE; GATA transcription factor 19
STRINGGRMZM2G397616_P011e-174(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.12e-20GATA transcription factor 19