PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G396114_P02
Common NameLOC100281671
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 302aa    MW: 32348.2 Da    PI: 6.7386
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G396114_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.27.5e-101121491954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  GRMZM2G396114_P02 112 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 149
                        664459******************************88 PP
2BELL63.54.5e-211433072
               BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                       +q+v++ F+ v+g g+a+pYt+lA+ka+SrhFrcLkdaia q+
  GRMZM2G396114_P02  1 MQMVVNFFDSVMGFGAATPYTALAQKAMSRHFRCLKDAIAAQL 43
                       9***************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075266.4E-18140IPR006563POX domain
PROSITE profilePS5007112.690153IPR001356Homeobox domain
CDDcd000864.35E-1493154No hitNo description
SMARTSM003891.6E-993157IPR001356Homeobox domain
SuperFamilySSF466895.56E-1894160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-2996159IPR009057Homeodomain-like
PfamPF059201.2E-18110149IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MQMVVNFFDS VMGFGAATPY TALAQKAMSR HFRCLKDAIA AQLRATCELL GEKDAGTSSG  60
LTKGETPRLR AIDQSLRQQR AFHHMGMMEQ EAWRPQRGLP ERSVNILRSW LFEHFLHPYP  120
SDADKHLLAR QTGLSRNQVS NWFINARVRL WKPMIEEMYQ QECRELDGSS AGGGGPESVN  180
DPSGADDSHS PTTTGAAQLP QQQHHLGTVP GVMPHKPDPG AAGPSAADAA FVGIDPVELL  240
GGGADDLYGR FEPGVRVRYG PAAAGAAAGD VSLTLGLQHA GAGNAAGPDS TGRFSLRDYS  300
GC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A4e-1899157159Homeobox protein Meis2
5bng_B4e-1899157159Homeobox protein Meis2
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G396114
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G396114_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0645160.0BT064516.1 Zea mays full-length cDNA clone ZM_BFc0176J15 mRNA, complete cds.
GenBankEU9575010.0EU957501.1 Zea mays clone 1595427 homeodomain protein JUBEL1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148063.10.0homeodomain protein JUBEL1
SwissprotQ94KL51e-102BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLA0A1D6L3660.0A0A1D6L366_MAIZE; BEL1-like homeodomain protein 4
TrEMBLA0A317YBA90.0A0A317YBA9_MAIZE; BEL1-like homeodomain protein 2
TrEMBLC0P8970.0C0P897_MAIZE; BEL1-like homeodomain protein 4
STRINGGRMZM2G396114_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-101BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]