PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G395749_P01

Common Name

ZEAMMB73_427407

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

MYB_related

Protein Properties

Length: 1143aa MW: 127904 Da PI: 7.8484

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G395749_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.9	2e-07	306	343	3	42
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 +W+++E +++a +q+G++ W++I+ +g +++ +++s GRMZM2G395749_P01 306 KWSKDELTNFYEAYRQYGMD-WRKISIAIG-TKSSDMVQS 343 8*****************.*******.999888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00167	9.83E-5	306	343	No hit	No description
SuperFamily	SSF46689	3.04E-7	306	350	IPR009057	Homeodomain-like
Pfam	PF00249	3.2E-6	306	343	IPR001005	SANT/Myb domain
Pfam	PF06584	1.5E-27	766	866	IPR033471	DIRP domain
SMART	SM01135	3.3E-32	766	867	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1143 aa Download sequence Send to blast
MEHRVVAREL FIVALVGIEP RGSLDFSPPY NLRLGSAAHC EHGRLVHQKP KQYKLSDIGS 60 YDMNARYVFE YNANDVTADA MYYARIQAIK AWYRASADDR PMPNTKAEWS SIYLTEEQYL 120 EVSVPWMATR SEGYRALCRW WASPEFRAIS ERNRGNRWTE SFHNYGGDGH VRLAKRMRQK 180 SEYQRQEAEY QKKDEYYANL QAQNQALLSQ LAQQAGVPMP TYGMPPPDFA LLMPMLAPPP 240 PPSVTIPYAI FVEPKARTVL MGPSKGSRTI NKIIVKGSEY QQQHDDPSSS SKAKQKRRKL 300 SDFDPKWSKD ELTNFYEAYR QYGMDWRKIS IAIGTKSSDM VQSLFTLHRT FLSLPEHQAT 360 AMGFIALVTG HHNASEKTTT HRGYDHVVRA SGKARKHGEK PKSIDGPDLP NCQEAKISGF 420 SDLFQSRYYG VSSELVRYIR NHAVRRRTPR IPAIVSADRS TIDEATPGIE NVISSTKRKY 480 EAANNDSAIV PTNKYSPDRV SGFAEAHKAG QDHCLLETIG TGHVATCQQH SKKTRIQQTM 540 EEGQTGVVDH ETTMASKEGN KPVDLLNNNQ LFIDNISEDD MLVLDVLCSL MNAPSKMPKL 600 EINIPSGSVG KTDSTLSQRR EEGHPTIDLS KQGKPVGKSS ASKTRKKKYK ILDAEVPAVA 660 QNVCGNSLAL PETLRVVITD DSSLCTDSGR VGIPEASEDI PAEVPSAQTE TKPEVRMSGR 720 TRRKSQMHCK TKHMSCNEGS DNLQAKKLLH CLSSEPLRRW CTYEWFYSAV DYPWFSSNEF 780 VHYLDHAKLS HLSRLTIPEW GTIRSSLGIP RRFSNYFLAV EKENLEDYRE KVRKIYAQLS 840 DGSRDFLPAD LARPFSIGQQ VIVRHPNSRE LCDGKVVMMG PDCYKVHFDD PDIGVDIVKD 900 TDCMPVNWLY NRPDNMRSCL SNDAYSILEM DHIPDLTASE NEDHAVNGST VLEGLKSLRL 960 TSDRQPKAES IVNSERPPYR STSDSPAKSR DCPDNNSAGH YDELESYIAA FAERSLSQAR 1020 QMVDKAMQAN PGGNEDEKVC TSNQVAGCAG PGFEPARGAQ LPSDLISNGI ATVLSIKSLS 1080 DSRHPFANVA GVLDHACSML RPSCPQNLAL YDQIKRDIGI IKTQIFALMP TALGNCSPPV 1140 PPM

Sequence ? help Back to Top

Protein Sequence Length: 1143 aa Download sequence Send to blast

MEHRVVAREL FIVALVGIEP RGSLDFSPPY NLRLGSAAHC EHGRLVHQKP KQYKLSDIGS  60
YDMNARYVFE YNANDVTADA MYYARIQAIK AWYRASADDR PMPNTKAEWS SIYLTEEQYL  120
EVSVPWMATR SEGYRALCRW WASPEFRAIS ERNRGNRWTE SFHNYGGDGH VRLAKRMRQK  180
SEYQRQEAEY QKKDEYYANL QAQNQALLSQ LAQQAGVPMP TYGMPPPDFA LLMPMLAPPP  240
PPSVTIPYAI FVEPKARTVL MGPSKGSRTI NKIIVKGSEY QQQHDDPSSS SKAKQKRRKL  300
SDFDPKWSKD ELTNFYEAYR QYGMDWRKIS IAIGTKSSDM VQSLFTLHRT FLSLPEHQAT  360
AMGFIALVTG HHNASEKTTT HRGYDHVVRA SGKARKHGEK PKSIDGPDLP NCQEAKISGF  420
SDLFQSRYYG VSSELVRYIR NHAVRRRTPR IPAIVSADRS TIDEATPGIE NVISSTKRKY  480
EAANNDSAIV PTNKYSPDRV SGFAEAHKAG QDHCLLETIG TGHVATCQQH SKKTRIQQTM  540
EEGQTGVVDH ETTMASKEGN KPVDLLNNNQ LFIDNISEDD MLVLDVLCSL MNAPSKMPKL  600
EINIPSGSVG KTDSTLSQRR EEGHPTIDLS KQGKPVGKSS ASKTRKKKYK ILDAEVPAVA  660
QNVCGNSLAL PETLRVVITD DSSLCTDSGR VGIPEASEDI PAEVPSAQTE TKPEVRMSGR  720
TRRKSQMHCK TKHMSCNEGS DNLQAKKLLH CLSSEPLRRW CTYEWFYSAV DYPWFSSNEF  780
VHYLDHAKLS HLSRLTIPEW GTIRSSLGIP RRFSNYFLAV EKENLEDYRE KVRKIYAQLS  840
DGSRDFLPAD LARPFSIGQQ VIVRHPNSRE LCDGKVVMMG PDCYKVHFDD PDIGVDIVKD  900
TDCMPVNWLY NRPDNMRSCL SNDAYSILEM DHIPDLTASE NEDHAVNGST VLEGLKSLRL  960
TSDRQPKAES IVNSERPPYR STSDSPAKSR DCPDNNSAGH YDELESYIAA FAERSLSQAR  1020
QMVDKAMQAN PGGNEDEKVC TSNQVAGCAG PGFEPARGAQ LPSDLISNGI ATVLSIKSLS  1080
DSRHPFANVA GVLDHACSML RPSCPQNLAL YDQIKRDIGI IKTQIFALMP TALGNCSPPV  1140
PPM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.137315	1e-179	meristem

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G395749

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G395749_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT067216	1e-177	BT067216.2 Zea mays full-length cDNA clone ZM_BFb0310L16 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008655696.1	0.0	protein ALWAYS EARLY 2 isoform X1
TrEMBL	A0A1D6FFN2	0.0	A0A1D6FFN2_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRING	GRMZM2G395749_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8696	30	38
Representative plant	OGRP12826	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-59	DNA binding

Link Out ? help Back to Top
Phytozome	GRMZM2G395749_P01