PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G395672_P01
Common NameZEAMMB73_691302, Zm.148381
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 268aa    MW: 28779.2 Da    PI: 7.2376
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G395672_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.1e-181966148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT+eEdell++av++ G g+W+t +r+ g+ R++k+c++rw +yl
  GRMZM2G395672_P01 19 RGAWTPEEDELLARAVAKDGEGRWRTLPRRAGLLRCGKSCRLRWMNYL 66
                       89******************************99************97 PP
2Myb_DNA-binding47.15.5e-1573117248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        g+  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  GRMZM2G395672_P01  73 GPIAADEEDLILRLHRLLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 117
                        566689***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2661466IPR017930Myb domain
SuperFamilySSF466899.17E-2917113IPR009057Homeodomain-like
SMARTSM007175.0E-131868IPR001005SANT/Myb domain
PfamPF002495.0E-161966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-222073IPR009057Homeodomain-like
CDDcd001671.08E-112166No hitNo description
PROSITE profilePS5129425.0567121IPR017930Myb domain
SMARTSM007175.0E-1471119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2474122IPR009057Homeodomain-like
PfamPF002491.8E-1376117IPR001005SANT/Myb domain
CDDcd001671.58E-1177117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MRKPAVQQRG AGAIRTLKRG AWTPEEDELL ARAVAKDGEG RWRTLPRRAG LLRCGKSCRL  60
RWMNYLRPDI KRGPIAADEE DLILRLHRLL GNRWSLIAGR LPGRTDNEVK NYWNSHLSKK  120
LVARGIDPRT HTPLPAAAAS LHSHSHRADD DSPAGAAGSS ADKTPPPLVE VEPSVAPPPA  180
QPNSSFGDGS SGDFAGGMMG LGSEGFDGVG DPFCAPAPGG FHLGCPVVDD ATFSSFLDSL  240
MNEERMRIAD YIGDHRDADG GNDQGGAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25171215108B-MYB
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G395672
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G395672_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0146660.0KR014666.1 Zea mays cultivar RP4Htn1 hypothetical proteins, DUF630 domain protein, putative zinc finger protein, esterase/lipase/thioesterase, wall-associated receptor-like kinase 2 (WAK-RLK2), wall-associated receptor-like protein (WAK-RLP1), wall-associated receptor-like kinase 1 (WAK-RLK1), putative reticulon protein, cytidylyltransferase domain protein, and hypothetical proteins genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656780.10.0transcription repressor MYB5
SwissprotQ388505e-69MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A3L6DSI80.0A0A3L6DSI8_MAIZE; Transcription repressor MYB5
STRINGGRMZM2G395672_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-65myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]