PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G395549_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 898aa    MW: 100418 Da    PI: 4.5249
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G395549_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.1e-102292691055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  GRMZM2G395549_P01 229 RKRRERINERLKVLQSLVPNG-----TKVDMSTMLEEAVHYVKFLQ 269
                        9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.792219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-12223275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-11224272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.80E-12228273No hitNo description
PfamPF000101.8E-7229269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF483712.65E-6431506IPR016024Armadillo-type fold
SMARTSM002990.096445574IPR000547Clathrin, heavy chain/VPS, 7-fold repeat
PfamPF006371.5E-11499574IPR000547Clathrin, heavy chain/VPS, 7-fold repeat
Gene3DG3DSA:1.25.40.102.1E-96509735IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF483712.47E-82511778IPR016024Armadillo-type fold
PROSITE profilePS5023640.023568714IPR000547Clathrin, heavy chain/VPS, 7-fold repeat
PfamPF006377.8E-28575711IPR000547Clathrin, heavy chain/VPS, 7-fold repeat
SMARTSM002991.6E-39575714IPR000547Clathrin, heavy chain/VPS, 7-fold repeat
SMARTSM002995.5E-14717843IPR000547Clathrin, heavy chain/VPS, 7-fold repeat
PfamPF006371.8E-17726826IPR000547Clathrin, heavy chain/VPS, 7-fold repeat
PROSITE profilePS5023619.127726827IPR000547Clathrin, heavy chain/VPS, 7-fold repeat
Gene3DG3DSA:1.25.40.108.6E-13736781IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.105.5E-28782888IPR011990Tetratricopeptide-like helical domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006886Biological Processintracellular protein transport
GO:0016192Biological Processvesicle-mediated transport
GO:0005622Cellular Componentintracellular
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MEDGGLVSEA GAWAELGTGG DESEELVAQL LGAFFRSHGE EGRHQLLWSD DQASSDDVHG  60
DGSLAVPLAY DGCCGYLSYS GSNSDELPLG SSSRAAPAGG PPEELLGAAE TEYLNNVAAA  120
DHPFFKWCGN GEGLDGPTSV VGTLGLGSGR KRARKKSGDE DEDPSTAIAS GSGPTSCCTT  180
SDSDSNASPL ESADAGARRP KGNENARAAG RGAAAATTTT AEPQSIYARK RRERINERLK  240
VLQSLVPNGT KVDMSTMLEE AVHYVKFLQL QIRLILCEAS PQLTDSRNGG DTSNEAHKRN  300
STDGNNKQTC ELDAFIYKSL EGIQDQEFCN IIELLSVRPP IDAKLKLMKE IAEEHEIGPT  360
YFNGSTLPLP KEKHDETVAA SATKLPDEDY ESNTGLDSLD LPEVPKAAIC PPSLNHIFNL  420
SFSFSVVIFL AVDVLLDNIR SIDRAEEFAF RAEEDAVWSQ VAKAQLREGL VSEAIESFIR  480
ADDAAHFLDV IRAAEEANVY NDLVKLTDSM PNVADLQNVG DRLYDEELYE AAKIIYAFIS  540
NWAKLAVTLV KLKQYQGAVD AARKANSAKT WKEVDDLEEV SEYYQNRGCF SELIALMESG  600
LGLERAHMGI FTELGVLYAR YRSEKLMEHI KLFSTRLNIP KLIRACDEQQ HWKELTYLYI  660
QYDEFDNAAT TIMNHSSDAW DHMQFKDVCV KVSNVELYYK AVQFYLQEHP DLINDMLNVL  720
ALRLDHTRVV DIMRKEDYER LRESVDTHDN FDQIGLAQKL QKHELLEMRR IAAYIYKKAD  780
RWKQSIALSK KDNMYKDCME TCSQSGDREL SEDFLVYFIE QGKKECFVSC LFICYDLIRP  840
DVALELAWMN NMVDFAFPYL LQFIREYTSK VDDLVKDKIE SQKEERAKEK EEKDLVAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xi5_E1e-15539689110471630Clathrin heavy chain
1xi5_F1e-15539689110471630Clathrin heavy chain
1xi5_G1e-15539689110471630Clathrin heavy chain
1xi5_H1e-15539689110471630Clathrin heavy chain
1xi5_I1e-15539689110471630Clathrin heavy chain
3iyv_A1e-15539689110471630Clathrin heavy chain
3iyv_B1e-15539689110471630Clathrin heavy chain
3iyv_C1e-15539689110471630Clathrin heavy chain
3iyv_D1e-15539689110471630Clathrin heavy chain
3iyv_E1e-15539689110471630Clathrin heavy chain
3iyv_F1e-15539689110471630Clathrin heavy chain
3iyv_G1e-15539689110471630Clathrin heavy chain
3iyv_H1e-15539689110471630Clathrin heavy chain
3iyv_I1e-15539689110471630Clathrin heavy chain
3lvg_A1e-16443189630582Clathrin heavy chain 1
3lvg_B1e-16443189630582Clathrin heavy chain 1
3lvg_C1e-16443189630582Clathrin heavy chain 1
3lvh_A1e-16443189630582Clathrin heavy chain 1
3lvh_B1e-16443189630582Clathrin heavy chain 1
3lvh_C1e-16443189630582Clathrin heavy chain 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.729290.0ear| embryo| endosperm| meristem| ovary| pericarp| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G395549
Functional Description ? help Back to Top
Source Description
UniProtClathrin is the major protein of the polyhedral coat of coated pits and vesicles.
UniProtClathrin is the major protein of the polyhedral coat of coated pits and vesicles.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G395549_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC0060650.0KC006065.1 Zea mays cultivar Zhongnuo No. 1 clathrin heavy chain 1 (CHC1) gene, promoter region and complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662354.20.0clathrin heavy chain 1
SwissprotQ2QYW20.0CLH2_ORYSJ; Clathrin heavy chain 2
SwissprotQ2RBN70.0CLH1_ORYSJ; Clathrin heavy chain 1
TrEMBLA0A1D6IQJ80.0A0A1D6IQJ8_MAIZE; Putative clathrin heavy chain family protein
STRINGGRMZM2G395549_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43175.15e-26bHLH family protein