PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G394941_P01 | ||||||||
Common Name | DOF42, LOC103627668 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 300aa MW: 30315.5 Da PI: 8.2095 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.4 | 3.7e-39 | 47 | 105 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +a+kcprC+stntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k++ GRMZM2G394941_P01 47 PEAVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRA 105 5789***************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-29 | 37 | 104 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.4E-33 | 49 | 104 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.329 | 50 | 104 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 52 | 88 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 300 aa Download sequence Send to blast |
MQEFQSIPGL AGRLFGGAAA PGDLRRAQAA QHGPGGARCG GASPAAPEAV KCPRCESTNT 60 KFCYYNNYNL SQPRHFCKSC RRYWTKGGVL RNVPVGGGCR KAKRASPSAS ASASSPASSS 120 APSTPASADA AKNPRRASAS PRSNSGSASP TAAAATTPTP TDPSTSATPS SNGVAFTGSH 180 HSSNPFSTID VAAAPPAPIF ADQAAALASL FAPPPPPPLP VFSFAAAQPK EEEAPTNSEL 240 QQHLAAQAAP SSSVSEDIMA PFASLDAAGI FELGDAASAA AYWSAGSCWA DVQDPSLYLP |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.66956 | 3e-77 | meristem| ovary| root |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G394941 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in germinating seeds up to 5 days after imbibition. {ECO:0000269|PubMed:11470159}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G394941_P01 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by gibberellin. {ECO:0000269|PubMed:11470159}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC210260 | 0.0 | AC210260.5 Zea mays BAC clone CH201-44F4 from chromosome 5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008646182.1 | 0.0 | dof zinc finger protein 4 | ||||
Swissprot | Q6Z345 | 2e-84 | DOF4_ORYSJ; Dof zinc finger protein 4 | ||||
TrEMBL | A0A060D249 | 0.0 | A0A060D249_MAIZE; C2C2-DOF transcription factor (Fragment) | ||||
STRING | GRMZM2G394941_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6496 | 30 | 50 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60850.1 | 7e-35 | OBF binding protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G394941_P01 |
Entrez Gene | 103627668 |
Publications ? help Back to Top | |||
---|---|---|---|
|