PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G392823_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 262aa    MW: 27962 Da    PI: 9.3694
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G392823_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.6e-09442148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++ Edel+++ ++++G g        +g+gR++ +c+srw++yl
  GRMZM2G392823_P01  4 KGKWSKAEDELIINHIQRHG-G--------IGLGRCGRSCRSRWLNYL 42
                       79******************.5........5999************97 PP
2Myb_DNA-binding34.74e-114992247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       g +T+ Ed ++ +  ++ G+  W+ Ia+ ++ gRt+  +k++w++ 
  GRMZM2G392823_P01 49 GHFTPAEDRIICEMYRRKGSC-WSVIAAQLP-GRTDLAVKNYWNST 92
                       679******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.616142IPR017930Myb domain
SMARTSM007171.3E-5344IPR001005SANT/Myb domain
SuperFamilySSF466892.34E-22389IPR009057Homeodomain-like
PfamPF002494.3E-7442IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-13549IPR009057Homeodomain-like
PROSITE profilePS5129420.2914397IPR017930Myb domain
SMARTSM007173.0E-114795IPR001005SANT/Myb domain
PfamPF002495.3E-104992IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-215096IPR009057Homeodomain-like
CDDcd001671.30E-85193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MMKKGKWSKA EDELIINHIQ RHGGIGLGRC GRSCRSRWLN YLRPGLKHGH FTPAEDRIIC  60
EMYRRKGSCW SVIAAQLPGR TDLAVKNYWN STLKKKYRPL PAARTAAAAT WRRHRACAAD  120
STSSDAGVPA RGLQPAVCSS GGSSSSEESS TAGSSSPVKP VLAGPTTPVP LAAASQEPVA  180
SVPASGPAVL FEQKPALVGR LPLEKTPPLP PPPAGGQTGG GLMDIVCRPL SPIPLSFMES  240
ELLACIDGFD DTDSFLPWFD QH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-2529625127MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G392823
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G392823_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020393544.11e-171LOW QUALITY PROTEIN: transcription factor MYB30
TrEMBLA0A1D6GNN11e-151A0A1D6GNN1_MAIZE; Transcription factor MYB36
STRINGGRMZM2G392823_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.18e-24myb domain protein 87