PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G392306_P01
Common NameZEAMMB73_564658
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Nin-like
Protein Properties Length: 250aa    MW: 28766.8 Da    PI: 5.751
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G392306_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK87.11.5e-27124172452
             RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                         +++e++s+yF++pi +AA+eL+v+lT+LK++CR++GI+RWPhRk+ksl
  GRMZM2G392306_P01 124 VLTFEVVSRYFYMPIMQAARELNVGLTLLKKRCRELGIPRWPHRKMKSL 172
                        699********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.713108192IPR003035RWP-RK domain
PfamPF020421.3E-21125172IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEAKNEESSL WPYWTGAWPD SYLLEEEELL SGLSLPSLHF QPSCSAIVPS NNLQGELDAI  60
IFEDDVLRHW DGMEQYDNKI EAEEGNERLP LLCYAEEKEV VSSNNARVVV GADQQVRSDS  120
EAAVLTFEVV SRYFYMPIMQ AARELNVGLT LLKKRCRELG IPRWPHRKMK SLQSLIKNVQ  180
VLQEAGKATG EEHLRAVVEM LQQEKQLLEQ RPYVQLDEKT KRLRQACFKA NYKKRRLLAL  240
QGGEAPRIHK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G392306
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G392306_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436751.11e-137protein RKD2
TrEMBLA0A1D6NRP61e-171A0A1D6NRP6_MAIZE; Pentatricopeptide repeat-containing protein mitochondrial
STRINGGRMZM2G392306_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45903365
Representative plantOGRP5671777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.16e-39RWP-RK domain-containing protein