PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G390641_P02
Common NameZm.36960
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 690aa    MW: 74344.1 Da    PI: 7.9814
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G390641_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.1e-24121222199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+++
  GRMZM2G390641_P02 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSAFVNQKRLVAGDSIVFMRT 210
                        89****************************996555555..8999*********************************************55 PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                           ++ l+v+++r+
  GRMZM2G390641_P02 211 --GNGDLCVGIRRA 222
                        ..56667****996 PP
2Auxin_resp117.61e-38280363183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        aa+ a+++++FevvY+Prast+eF+vk+  v++a+++++++GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  GRMZM2G390641_P02 280 AANLAASGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWCAGMRFKMAFETEDSSRISWfMGTVAAVQVADPIRWPNSPWRLLQ 363
                        7899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-37115226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-29116223IPR015300DNA-binding pseudobarrel domain
CDDcd100179.35E-22120221No hitNo description
PROSITE profilePS5086313.07121223IPR003340B3 DNA binding domain
PfamPF023623.0E-22121222IPR003340B3 DNA binding domain
SMARTSM010192.4E-21121223IPR003340B3 DNA binding domain
PfamPF065072.6E-33280363IPR010525Auxin response factor
PROSITE profilePS5174519.071609690IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MITFVDSAAM ELERESGRCL VDPQLWHACA GGMVQMPPVH SRVYYFPQGH AEHAQGHAHA  60
DLPAGRVPAL VLCRVDAVRF LADPDTDEVL ARVRLAPVRP NEPDHADAAA PGAREDKPAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT VLAKDVHGVV WKFRHIYRGT  180
PRRHLLTTGW SAFVNQKRLV AGDSIVFMRT GNGDLCVGIR RAKKGGIGGG PEFPHHQPPD  240
GGGYGYGYAG FSTFLRGEED DAAARGKVRV LVRPEEVVEA ANLAASGQPF EVVYYPRAST  300
PEFCVKAGAV RAAMRTQWCA GMRFKMAFET EDSSRISWFM GTVAAVQVAD PIRWPNSPWR  360
LLQNVKRVSP WLVELVSSTP AIHHLTPFSP PSRKKLCIPL YPEGHQLPAP MFHGSPLVGR  420
GVGPMRYFPD GGTPPAGIQG ARHAQFGISL PDLHHLTRLQ SSLSPHAHGL RHQLDHGARP  480
RIAGGLIVGH PAARDDISCL LTIGTAPHKK PSDVKSAAAA PAPQLMLFGK PILTEQQISL  540
GFRPLPAPKK SPSDDAAETE RTVSNNSDAS SPAGTASGST PSISGGAPSS CQDNKAAATA  600
TATDDDDLLG HCKVFMQSED VGRTLDLSAV ASYEELYQRL ADMFGVDRAE LTSHVFYRDG  660
ASGALKHAGD EPFSEFTKTA RRLTIQTDAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-702037450388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.369600.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G390641
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G390641_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279650.0KJ727965.1 Zea mays clone pUT6078 ARF transcription factor (ARF21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354183.10.0uncharacterized protein LOC100384553
RefseqXP_008648196.10.0auxin response factor 21 isoform X1
RefseqXP_008648198.10.0auxin response factor 21 isoform X1
RefseqXP_008648199.10.0auxin response factor 21 isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLK7UYC80.0K7UYC8_MAIZE; Auxin response factor
STRINGGRMZM2G390641_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]