PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G390641_P01
Common NameARF21, Zm.36960
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 700aa    MW: 75511.4 Da    PI: 7.5586
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G390641_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.2e-24121222199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+++
  GRMZM2G390641_P01 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSAFVNQKRLVAGDSIVFMRT 210
                        89****************************996555555..8999*********************************************55 PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                           ++ l+v+++r+
  GRMZM2G390641_P01 211 --GNGDLCVGIRRA 222
                        ..56667****996 PP
2Auxin_resp117.61.1e-38280363183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        aa+ a+++++FevvY+Prast+eF+vk+  v++a+++++++GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  GRMZM2G390641_P01 280 AANLAASGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWCAGMRFKMAFETEDSSRISWfMGTVAAVQVADPIRWPNSPWRLLQ 363
                        7899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-37115226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-29116223IPR015300DNA-binding pseudobarrel domain
CDDcd100179.67E-22120221No hitNo description
PfamPF023623.1E-22121222IPR003340B3 DNA binding domain
PROSITE profilePS5086313.07121223IPR003340B3 DNA binding domain
SMARTSM010192.4E-21121223IPR003340B3 DNA binding domain
PfamPF065072.6E-33280363IPR010525Auxin response factor
PROSITE profilePS5174519.071619700IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MITFVDSAAM ELERESGRCL VDPQLWHACA GGMVQMPPVH SRVYYFPQGH AEHAQGHAHA  60
DLPAGRVPAL VLCRVDAVRF LADPDTDEVL ARVRLAPVRP NEPDHADAAA PGAREDKPAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT VLAKDVHGVV WKFRHIYRGT  180
PRRHLLTTGW SAFVNQKRLV AGDSIVFMRT GNGDLCVGIR RAKKGGIGGG PEFPHHQPPD  240
GGGYGYGYAG FSTFLRGEED DAAARGKVRV LVRPEEVVEA ANLAASGQPF EVVYYPRAST  300
PEFCVKAGAV RAAMRTQWCA GMRFKMAFET EDSSRISWFM GTVAAVQVAD PIRWPNSPWR  360
LLQVAWDEPD LLQNVKRVSP WLVELVSSTP AIHHLTPFSP PSRKKLCIPL YPEGHQLPAP  420
MFHGSPLVGR GVGPMRYFPD GGTPPAGIQG ARHAQFGISL PDLHHLTRLQ SSLSPHAHGL  480
RHQLDHGARP RIAGGLIVGH PAARDDISCL LTIGTAPHKK PSDVKSAAAA PAPQLMLFGK  540
PILTEQQISL GFRPLPAPKK SPSDDAAETE RTVSNNSDAS SPAGTASGST PSISGGAPSS  600
CQDNKAAATA TATDDDDLLG HCKVFMQSED VGRTLDLSAV ASYEELYQRL ADMFGVDRAE  660
LTSHVFYRDG ASGALKHAGD EPFSEFTKTA RRLTIQTDAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-762038450388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.369600.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G390641
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G390641_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279650.0KJ727965.1 Zea mays clone pUT6078 ARF transcription factor (ARF21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354183.10.0uncharacterized protein LOC100384553
RefseqXP_008648196.10.0auxin response factor 21 isoform X1
RefseqXP_008648198.10.0auxin response factor 21 isoform X1
RefseqXP_008648199.10.0auxin response factor 21 isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLK7UYC80.0K7UYC8_MAIZE; Auxin response factor
STRINGGRMZM2G390641_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]