PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G389567_P01 | ||||||||
Common Name | LOC100277208, Zm.67010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 80aa MW: 9217.19 Da PI: 12.4053 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.6 | 2.9e-05 | 31 | 65 | 19 | 55 |
HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ eL++++P a + +K + +L+++ eYI+ L+ GRMZM2G389567_P01 31 RLRELKKIVPAgA---RRRKADVDVVLRRTAEYICALE 65 688********88...******************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-4 | 30 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-5 | 30 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MVTLAGKGGR TSRGMVSLRR RRPFQLMVLR RLRELKKIVP AGARRRKADV DVVLRRTAEY 60 ICALELKVAL LRRLSHMYGV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.67010 | 1e-133 | ear| glume| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G389567 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G389567_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU967354 | 1e-133 | EU967354.1 Zea mays clone 301851 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008664631.1 | 1e-48 | uncharacterized protein LOC100277208 | ||||
TrEMBL | A0A317YIC7 | 2e-47 | A0A317YIC7_MAIZE; Uncharacterized protein | ||||
TrEMBL | B6TQT9 | 2e-47 | B6TQT9_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G389567_P01 | 4e-48 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5688 | 5 | 6 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G389567_P01 |
Entrez Gene | 100277208 |
Publications ? help Back to Top | |||
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