PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G389557_P01 | ||||||||
Common Name | Zm.131471 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 268aa MW: 30078.1 Da PI: 9.6347 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 139.2 | 2.6e-43 | 12 | 146 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkya.......tgkrknratksgyWkat 86 pGfrFhPt+eel+ +yLk+ ++g+kl++ ++i++v++y+++Pw+Lp + +e+ewyfF++rd + +g r++r+t++g+Wkat GRMZM2G389557_P01 12 PGFRFHPTEEELLEFYLKQAARGRKLKF-DIIPTVHLYRHDPWELPsLARVVGEREWYFFVPRDGGGRaakqqpgSGGRPSRTTERGFWKAT 102 9**************************9.99***************433335889******99854333333445677************** PP NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+d++v ++ ++l+glkktLv+y+grap+g+ktdWvm+eyrl GRMZM2G389557_P01 103 GSDRAVRCAadPKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 146 *******98777788***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 50.816 | 10 | 171 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-50 | 11 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-24 | 12 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 268 aa Download sequence Send to blast |
MAAEQQHQLD LPGFRFHPTE EELLEFYLKQ AARGRKLKFD IIPTVHLYRH DPWELPSLAR 60 VVGEREWYFF VPRDGGGRAA KQQPGSGGRP SRTTERGFWK ATGSDRAVRC AADPKRLIGL 120 KKTLVYYEGR APRGTKTDWV MNEYRLPDAA DASSDARVPQ VDVVLCKVYR KAVSLKELEQ 180 RVAMEELARA TATPSASHST GSPADSMSSS EIVMVPVGGV SLSPSAAMSM KREEAAKNQQ 240 QQDPFLTQLR SPRMESWWSA YYASVLNF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-43 | 4 | 171 | 8 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G389557 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G389557_P01 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU967633 | 0.0 | EU967633.1 Zea mays clone 304978 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008645096.1 | 0.0 | NAC domain-containing protein 35 | ||||
Swissprot | Q10S65 | 8e-88 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A1D6GWN4 | 0.0 | A0A1D6GWN4_MAIZE; NAC domain containing protein 36 | ||||
TrEMBL | A0A3L6ENQ8 | 0.0 | A0A3L6ENQ8_MAIZE; NAC domain-containing protein 35 | ||||
STRING | GRMZM2G389557_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1770 | 38 | 105 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G17040.1 | 2e-78 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G389557_P01 |
Publications ? help Back to Top | |||
---|---|---|---|
|