PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G388148_P02
Common NameLOC100304343
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CPP
Protein Properties Length: 485aa    MW: 53254.6 Da    PI: 7.0662
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G388148_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.23.3e-1367104139
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        k+kk+CnC++skClk+YCeCf++ ++C+  C+C++C N 
  GRMZM2G388148_P02  67 KKKKHCNCRNSKCLKMYCECFQELQYCDG-CNCSNCGNI 104
                        589**************************.******996 PP
2TCR49.49.1e-16152192141
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                        k++kgC+Ckks ClkkYCeC++a+++Cs++C+C +CkN+e 
  GRMZM2G388148_P02 152 KHHKGCHCKKSGCLKKYCECYQANVFCSKNCRCMHCKNSEG 192
                        589***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.2E-1167107IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.32468192IPR005172CRC domain
PfamPF036381.3E-969103IPR005172CRC domain
SMARTSM011143.8E-17152193IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.3E-12155190IPR005172CRC domain
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEQGRNQQHP QQLSSPPVLA AASEIKAPAV PSQQPKPAAP VMSVPRQWPI AFNPLKSSTE  60
EKSVTPKKKK HCNCRNSKCL KMYCECFQEL QYCDGCNCSN CGNIVGNENA RNEAIEAIRQ  120
RNPSAFQPKI GNDSNTLNVR KDNSGAVPLV AKHHKGCHCK KSGCLKKYCE CYQANVFCSK  180
NCRCMHCKNS EGNKDTETSI QRDHASDRNH IEQAANIAFN GSVGSSGYIC SLSRKRSHED  240
TQCVRINSEG SMPETQYQQG NHADVSMLPP CSTGFDGHNA ANTKPYNPNY RSPLANTIHL  300
SEVNDLVKQL VMVCRMAAAT IADDETDLIA EEKGSQSNNG LSNGNCKQQD FKEASSMVIL  360
SEGCSDQPNI DETGSHRSKT LDFSRPASPT TQALMCDEQD ATFGNEPASP TTQALMCEEQ  420
NTTFGNDYRS SFPLVSCDQD ISEINAAQEN LVLTGLREYL RVIITRGKIN GECLIAVSFI  480
KHVIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-236920111132Protein lin-54 homolog
5fd3_B3e-236920111132Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.255110.0ovary| pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G388148
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G388148_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0609020.0BT060902.1 Zea mays full-length cDNA clone ZM_BFb0068M03 mRNA, complete cds.
GenBankKJ7279980.0KJ727998.1 Zea mays clone pUT6120 CPP transcription factor (CPP9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001159253.10.0uncharacterized protein LOC100304343
TrEMBLA0A3L6EG540.0A0A3L6EG54_MAIZE; Protein tesmin/TSO1-like CXC 5
TrEMBLC0HEZ60.0C0HEZ6_MAIZE; CPP transcription factor
STRINGGRMZM2G388148_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.18e-64Tesmin/TSO1-like CXC domain-containing protein