PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G386362_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 354aa    MW: 36607.9 Da    PI: 6.2392
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G386362_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS32.51.1e-10136219145238
               GRAS 145 TgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                        T+++sp+s+++ el+ ++e+L+ fA+elgv ++f +    ++++l++ eL ++ +g+a+aV+l +   ++         + ++vL+lvk+l 
  GRMZM2G386362_P01 136 TALVSPASHHRLELNLIHENLSGFARELGVFLQFATY---NVDALDPAELvAITSGDAVAVHLPVGSAHVA--------AMPAVLRLVKRLG 216
                        899999*****************************95...899999999945566**********999998........4566*******99 PP

               GRAS 236 Pkv 238
                        +k 
  GRMZM2G386362_P01 217 AKA 219
                        886 PP
2GRAS42.41.1e-13219332260372
               GRAS 260 aleyysalfdsleaklpreseerikvErellgreivn.vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                        a++ +++l+ds++a  ++++e+   +Er++++ +++  vv+   a+   ++     Wr  l +aG+ pv+ s++a++qa++ll++++  g+r
  GRMZM2G386362_P01 219 AFQPCVSLLDSVDAVGGADAEAVGRIERFMVQSDVELrVVSRHRAAAAVDKPPPLPWRTGLASAGLMPVQASTFAESQAEALLKRMALMGFR 310
                        7788899*****99999******************861555555556677778889************************************ PP

               GRAS 351 veeesgslvlgWkdrpLvsvSa 372
                        ve++ g+l++    r+  +vSa
  GRMZM2G386362_P01 311 VEKRGGALCFLLAARSASTVSA 332
                        *******997777766666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.8E-11219332IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MPTYTVRHSL PVGAAAVAGA NAKNVSPPPV AAAWPGGGGA EEAVAGGKEE WQLTPLDMGL  60
GVGEGWDVAD AVAPPGLAPD HTFLRWIIGG EDASATMGSV MDSPVLELDH APSMMSLAFG  120
STMPFAPTLE DAKPGTALVS PASHHRLELN LIHENLSGFA RELGVFLQFA TYNVDALDPA  180
ELVAITSGDA VAVHLPVGSA HVAAMPAVLR LVKRLGAKAF QPCVSLLDSV DAVGGADAEA  240
VGRIERFMVQ SDVELRVVSR HRAAAAVDKP PPLPWRTGLA SAGLMPVQAS TFAESQAEAL  300
LKRMALMGFR VEKRGGALCF LLAARSASTV SAASWSPCRR GGADRRGYAA ATKS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G386362
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G386362_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0859671e-162BT085967.2 Zea mays full-length cDNA clone ZM_BFc0091E14 mRNA, complete cds.
GenBankKJ7277571e-162KJ727757.1 Zea mays clone pUT5701 GRAS transcription factor (GRAS33) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142045.21e-106uncharacterized protein LOC100274201
TrEMBLA0A1D6DVQ30.0A0A1D6DVQ3_MAIZE; Scarecrow-like protein 6
STRINGGRMZM2G386362_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60630.12e-16GRAS family protein