PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G386163_P01
Common NameZm.63792
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 882aa    MW: 98206 Da    PI: 5.9215
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G386163_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.34.2e-55221521128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+++yL++k+++ ++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+
  GRMZM2G386163_P01  22 LPPGFRFHPTDEELITYYLRQKIADASFTA-RAIAEVDLNKCEPWDLPEKAKLGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEI 112
                        79*************************999.89***************99999*************************************** PP

                NAM  93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++     + elvg+kktLvfykgrap+gekt+Wvmheyrl
  GRMZM2G386163_P01 113 FTGqlpaTPELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 152
                        *9766666667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-6419175IPR003441NAC domain
PROSITE profilePS5100561.24122175IPR003441NAC domain
PfamPF023651.2E-2823152IPR003441NAC domain
PfamPF139633.5E-6366392IPR029480Transposase-associated domain
PfamPF139523.3E-17624691IPR025312Domain of unknown function DUF4216
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    Send to blast
MEASVGAAGG GGGKSKKEEE SLPPGFRFHP TDEELITYYL RQKIADASFT ARAIAEVDLN  60
KCEPWDLPEK AKLGEKEWYF FSLRDRKYPT GVRTNRATNA GYWKTTGKDK EIFTGQLPAT  120
PELVGMKKTL VFYKGRAPRG EKTNWVMHEY RLHHSSRSVP KSNKDEWVVC RVFAKSTGAK  180
KYPSNNAHSR LHHHPYALDM VPPLLQHDPF ARHHNYPYMT SADLAELARF ARGTPGLHPH  240
IQPAPHPGTS ASAYMNPAAA GAPPSFALSG GLSLNLGASP AMPPSLPPTA FHATMSMAMS  300
GQTAAPSCAG TGNNHRHQVV AGEHQQQQMA AAGLGGCVIV PGADGGFVAD AAAGGRYQSL  360
DVEQLVERRT MSIHICKNGY MPGYEVWVHH GEDPPPRIVS EVQSHEEEDY DRMEEMLDDV  420
RHEFLTVDSE NPGQPTEFED PATHEEHNVN AHTLRYHVDE PPISDIEIFQ WRGKTVGPST  480
TYYFTNDEWK TALLYMYNNM EEMSQFLLEF DSQNCIYGCE RDQIRREGKD GGLNFLCWFR  540
DYVDKNDNIH PDLRQLSLGA VTGRRYGRYD VNGFRFRSTR FEDDHPLSAT TNSGVVTRAV  600
DDEGKVTNYY GVINDIIEYK FFGDKQLKVV FFDCDWFSPN TTRENQYGMV EVKHNDRLKG  660
HDTIILAHQC EQVYYMTYPS KKNGLVDWRV VYKVNPRERL YAPGDAGYVE SQIEQEVGAA  720
EIFQDEELTS TMSKKMKSLA RSLLGSRSSS RSSSRGEDSV FQGTGSTMSR RRALAEHLPP  780
QDDDEIEEPV VEDHARDDVE DDGGDNVGDD AGDDAGGDSG AGDSGAGGDS AAGSGTSRVK  840
RTRKLHFVGP PPELPPESRV VIKPSGKTWI DDSFTGTGHY RQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-552118116171NO APICAL MERISTEM PROTEIN
1ut4_B3e-552118116171NO APICAL MERISTEM PROTEIN
1ut7_A3e-552118116171NO APICAL MERISTEM PROTEIN
1ut7_B3e-552118116171NO APICAL MERISTEM PROTEIN
3swm_A3e-552118119174NAC domain-containing protein 19
3swm_B3e-552118119174NAC domain-containing protein 19
3swm_C3e-552118119174NAC domain-containing protein 19
3swm_D3e-552118119174NAC domain-containing protein 19
3swp_A3e-552118119174NAC domain-containing protein 19
3swp_B3e-552118119174NAC domain-containing protein 19
3swp_C3e-552118119174NAC domain-containing protein 19
3swp_D3e-552118119174NAC domain-containing protein 19
4dul_A3e-552118116171NAC domain-containing protein 19
4dul_B3e-552118116171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1372560.0meristem| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G386163
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G386163_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2066910.0AC206691.5 Zea mays BAC clone CH201-149B20 from chromosome 10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGRMZM2G386163_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93613846
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.25e-83NAC domain containing protein 38