PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G385543_P01
Common NamebHLH154
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 284aa    MW: 31205.2 Da    PI: 6.0993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G385543_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-10115163355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  GRMZM2G385543_P01 115 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 163
                        58**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.62E-11110167No hitNo description
SuperFamilySSF474597.85E-17110179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16112179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.447112162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-8115163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10118168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAYNGQYGFG SYGMGLEDKL GLYPSSSGTL SQDIQMSEEH SGVVKKRKGV EDCVTLLHDA  60
GDQQTKGSPQ PERNSVEEGN RKISPKMQSK EDSSDGDGTK EDYVHIRAKR GQATNSHSLA  120
ERLRRKKISE RMKLLQDLVP GCSKITGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPEL  180
GFDIEQIISK QMLLSQDRHL AFYGVEPGSS GLTGPFNQGI MQPELMCTIA NPVDVLHGAI  240
HDASTMNHIP SMWEGLQNMP QMNFNPGVAA DSGTNNSGSM KIEQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1032010.0ear| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G385543
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G385543_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280070.0KJ728007.1 Zea mays clone pUT6140 bHLH transcription factor (bHLH154) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020393463.10.0transcription factor bHLH49 isoform X2
RefseqXP_020393464.10.0transcription factor bHLH49 isoform X2
TrEMBLA0A060D7A40.0A0A060D7A4_MAIZE; BHLH transcription factor (Fragment)
TrEMBLA0A1D6GIA80.0A0A1D6GIA8_MAIZE; Transcription factor bHLH62
STRINGGRMZM2G385543_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.39e-57bHLH family protein