PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G384386_P01
Common NameLOC100273192
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 308aa    MW: 33021.4 Da    PI: 7.1798
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G384386_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-1851101155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s++ GVr+++ +grWvAeI+d +   ++ r +lg+f tae Aaka+++a++ l+g
  GRMZM2G384386_P01  51 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAAKAYDEAARLLRG 101
                        79********.7*********32...35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-1251101IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-1951110IPR016177DNA-binding domain
CDDcd000189.13E-1751109No hitNo description
PROSITE profilePS5103220.16552109IPR001471AP2/ERF domain
SMARTSM003807.2E-3552115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2752109IPR001471AP2/ERF domain
PRINTSPR003675.9E-75364IPR001471AP2/ERF domain
PRINTSPR003675.9E-77591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MELHFQAQPP VFQLENYSSS SSYYYYQQQE AAAQAKPSKP RGRKKGSNNH SKFVGVRQRP  60
SGRWVAEIKD TTQKIRMWLG TFETAEAAAK AYDEAARLLR GTDARTNFAP RISPDCPLAV  120
RIRGLLHHKK IKKAKAAAAA AKQQASSSSP ASTTSNSNSN SHSTNSARGG GSSITTTTTS  180
SSSSSSSSSA VSCDDDMATQ GGGTGALDAG EVYRPGFATA GTEEEFDSWM FDSAFPALDS  240
FAAVDSAVPA AGTTEEPGAE MAEFERIKVE RRISASLYAM NGLQEYFDRV LDASACDSLW  300
DLSPLCHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-13501081271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G384386
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G384386_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0404150.0BT040415.1 Zea mays full-length cDNA clone ZM_BFc0090C04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141108.10.0uncharacterized protein LOC100273192
TrEMBLB4FTH70.0B4FTH7_MAIZE; Ethylene-responsive transcription factor RAP2-11
TrEMBLK4JE940.0K4JE94_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM2G384386_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-26related to AP2 11