PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G384339_P02
Common NameLOC100274485
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 464aa    MW: 51283.4 Da    PI: 4.8048
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G384339_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.69.9e-342905102
                        HHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
       HSF_DNA-bind   5 klyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                        k+ye+++d++++ ++sw   +nsf+v+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  GRMZM2G384339_P02   2 KTYEMVDDPATDGVVSWGPGNNSFIVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKT 84 
                        9******************99*****************************************999.........****************** PP

                        XXXXXX CS
       HSF_DNA-bind  97 ikrkks 102
                        i+r+k 
  GRMZM2G384339_P02  85 INRRKP 90 
                        ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.0E-36188IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.8E-33188IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-53188IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-29288IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-103749IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403862IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.6E-105062IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MKTYEMVDDP ATDGVVSWGP GNNSFIVWNT PEFARDLLPK YFKHSNFSSF VRQLNTYGFR  60
KVDPDRWEFA NEGFLRGQKH LLKTINRRKP SLQGNSQPQQ PQLQNAPVPS CVEVGKFGLE  120
EEIERLKRDK NVLMQELVRL RQQQQTTDHQ LQTLGKRLQG MESRQQQMMS FLAKAMQSPG  180
FLAQFVQRNE NSRRRIVAAN KKRRLPKQDG GLESESSAAS LDGQIIKYQP SINEAAKAML  240
RKILNVDSSH RFESMGNSDN SNNNNILLED YMPAAQAFES SSSTRNSGVT LAEVPANSGL  300
AYVGTSSAIC SPPAAPEMQC PVVLDNKAYK QVASMSAVPP VSSDMGIIPE FSDLADLVSV  360
DILGGAFEMM PGPEFPLPEE GDDGTTMYNN NDEEAQSLPG IINSIWEQFL VGSPLSTDNE  420
EVDSAGGLYA QEDGWSKVGN IANLTEQMGL VSSTNHRDSG NGLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-2429223124Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.40520.0ear| endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G384339
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G384339_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0431690.0BT043169.1 Zea mays full-length cDNA clone ZM_BFc0116O04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142316.10.0uncharacterized protein LOC100274485
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLB4G1D10.0B4G1D1_MAIZE; Uncharacterized protein
STRINGGRMZM2G384339_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-111heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]