PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G384339_P01
Common NameLOC100274485
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 497aa    MW: 54104.6 Da    PI: 4.8104
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G384339_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.33.2e-35321232102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+ye+++d++++ ++sw   +nsf+v+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+l
  GRMZM2G384339_P01  32 FLMKTYEMVDDPATDGVVSWGPGNNSFIVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHL 114
                        9*********************99*****************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  GRMZM2G384339_P01 115 LKTINRRKP 123
                        ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.9E-6128121IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.32E-3528121IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-3829121IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.0E-193255IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.5E-3132121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-197082IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-198395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MQGGGVAAAA VPVHAAVGGD GGGAAAAPPP PFLMKTYEMV DDPATDGVVS WGPGNNSFIV  60
WNTPEFARDL LPKYFKHSNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG QKHLLKTINR  120
RKPSLQGNSQ PQQPQLQNAP VPSCVEVGKF GLEEEIERLK RDKNVLMQEL VRLRQQQQTT  180
DHQLQTLGKR LQGMESRQQQ MMSFLAKAMQ SPGFLAQFVQ RNENSRRRIV AANKKRRLPK  240
QDGGLESESS AASLDGQIIK YQPSINEAAK AMLRKILNVD SSHRFESMGN SDNSNNNNIL  300
LEDYMPAAQA FESSSSTRNS GVTLAEVPAN SGLAYVGTSS AICSPPAAPE MQCPVVLDNK  360
AYKQVASMSA VPPVSSDMGI IPEFSDLADL VSVDILGGAF EMMPGPEFPL PEEGDDGTTM  420
YNNNDEEAQS LPGIINSIWE QFLVGSPLST DNEEVDSAGG LYAQEDGWSK VGNIANLTEQ  480
MGLVSSTNHR DSGNGLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A2e-26301218110Heat shock factor protein 1
5hdn_A2e-26301218110Heat shock factor protein 1
5hdn_B2e-26301218110Heat shock factor protein 1
5hdn_C2e-26301218110Heat shock factor protein 1
5hdn_D2e-26301218110Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.40520.0ear| endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G384339
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G384339_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0431690.0BT043169.1 Zea mays full-length cDNA clone ZM_BFc0116O04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142316.10.0uncharacterized protein LOC100274485
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLB4G1D10.0B4G1D1_MAIZE; Uncharacterized protein
STRINGGRMZM2G384339_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-111heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]