PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G383841_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 286aa    MW: 31248.7 Da    PI: 4.7494
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G383841_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.19e-102102501055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r+RR+riN+++  L+ l+P+      +K++ +++Le+A +Y+k Lq
  GRMZM2G383841_P01 210 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAAQYVKFLQ 250
                        9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.64E-14200265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.843200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-11205257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-10206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.34E-12209254No hitNo description
PfamPF000105.0E-7210250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEIDMMAQFL GAADDHCFTY EYEHVDESME AIAALFLPTL DTDSANFSSS CFNYAVPPQC  60
WPQPDHSSSV TSLLDPAENF EFPVRDPLPP SGFDPHCAVA YLTEDSSPLH GKRSSVIEEE  120
AANAAPAAKK RKAGASATTK GSKKSRKASK KDNIGDADDD GGYACVDTQS SSSCTSEDGN  180
FEGNTNSSSK KTCARASRGA ATEPQSLYAR KRRERINERL RILQNLVPNG TKVDISTMLE  240
EAAQYVKFLQ LQIKLLSCDD TWMYAPIAYN GINIGNVDLN IYSLQK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G383841
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Roots. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G383841_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670529.20.0transcription factor bHLH84
SwissprotQ84WK03e-48BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A1D6F0390.0A0A1D6F039_MAIZE; Transcription factor bHLH85
STRINGGRMZM2G383841_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-36ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]