PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G383594_P01
Common NameLOC103637745
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 440aa    MW: 47187.4 Da    PI: 6.6594
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G383594_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.7e-30209267259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+  C+++k+vers++dp+++++tY+++Hnh+
  GRMZM2G383594_P01 209 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkACSARKQVERSRTDPSMLVVTYTSDHNHP 267
                        699************************9989***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.099203269IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-30203269IPR003657WRKY domain
SuperFamilySSF1182901.44E-25206269IPR003657WRKY domain
SMARTSM007748.7E-36208268IPR003657WRKY domain
PfamPF031064.3E-25210267IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0009066anatomyanther
PO:0001007developmental stagepollen development stage
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MCDFFWLSPA DLGDLSDVVR ESLQPPPPHH HRLPAATPAS SAICSSGSHH LPEEEALLLL  60
QARLNFGGDD HDEARSQLQS QQQLVHSSSG MVELMLGSNG SGGCACDHAA ALCPHHHPEA  120
EELIPRPTSG PQQQLCASTR SSFVERRDDD APVLQEHVLD MAMAPHRPHS SAVKRRKSQT  180
KKVVCIPAPV AAPPGVGGRP STSGEVVPSD LWAWRKYGQK PIKGSPYPRG YYRCSSSKAC  240
SARKQVERSR TDPSMLVVTY TSDHNHPWPT QRNALAGSTR PASSSSSSAR GHHGHNHRHH  300
PSAAAVPDTA PAAHRHASNV AVADNATTPG SIISASVHRQ LLKQEVVDMD NSKPAEDAAA  360
DHDLGFGMFA DMDGALDVLC APDFHPKKQQ QQATAQQLEK LPEEEGTQLL LGPDPFSFGF  420
LDWVGASFGV GERAADDGGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-22177270280Disease resistance protein RRS1
5w3x_D3e-22177270280Disease resistance protein RRS1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G383594
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G383594_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0187272e-72AC018727.10 Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence.
GenBankAP0149662e-72AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126182e-72CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankKC9546102e-72KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658838.10.0probable WRKY transcription factor 35
TrEMBLA0A1D6KA860.0A0A1D6KA86_MAIZE; Putative WRKY transcription factor 14
TrEMBLA0A317YCF90.0A0A317YCF9_MAIZE; Putative WRKY transcription factor 35
STRINGGRMZM2G383594_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-52WRKY DNA-binding protein 35