PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G382029_P01 | ||||||||
Common Name | ZEAMMB73_281837 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 234aa MW: 25726.9 Da PI: 9.3762 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.8 | 8e-11 | 134 | 197 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 r+ WT+e++e+lv+a ++ ++ W Ia+t + +Rt+kq+k++w +y GRMZM2G382029_P01 134 RLEWTKEDEEKLVNAWFMHSNDpisgnnksgssFWGQIAATYNstsdpiRHRTAKQLKDHWVTY 197 789**********************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.027 | 129 | 198 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.94E-6 | 131 | 200 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-5 | 133 | 200 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-7 | 133 | 198 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.1E-7 | 134 | 197 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.72E-5 | 136 | 197 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSASLPRALF PAARPPPYPY PYHLYQYPPS SYGQPPTSQA GIQASFPVRP YAPPPPAADG 60 SQASFQIPPY APPPYAPPPY GVPPYAPYAP PPYGAPHPYA PPTYGAPPPV APLSVGSENQ 120 AEENPVPKEK RPKRLEWTKE DEEKLVNAWF MHSNDPISGN NKSGSSFWGQ IAATYNSTSD 180 PIRHRTAKQL KDHWVTYNRE VTKFNGFYLP RRKVGVKAEL TNAMVNGCSN GELI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.103788 | 2e-83 | endosperm| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G382029 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G382029_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041780 | 1e-78 | BT041780.1 Zea mays full-length cDNA clone ZM_BFb0053P10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020404741.1 | 1e-136 | extensin | ||||
TrEMBL | A0A1D6G138 | 1e-106 | A0A1D6G138_MAIZE; Uncharacterized protein | ||||
TrEMBL | A0A3L6EIR9 | 1e-106 | A0A3L6EIR9_MAIZE; Glutathione S-transferase T3 | ||||
STRING | GRMZM2G382029_P01 | 1e-166 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3263 | 3 | 37 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G382029_P01 |