PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G381748_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-other
Protein Properties Length: 286aa    MW: 31482 Da    PI: 7.6216
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G381748_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.51.9e-0749732751
                       HHHHHHHHHHCTS-HHHHHHHHHHH CS
           Homeobox 27 aeereeLAkklgLterqVkvWFqNr 51
                        ++ ++LA++++L+ rqV  WFqN 
  GRMZM2G381748_P01 49 SSSWKQLAQQVDLSARQVEAWFQNT 73
                       46789*******************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-54274IPR009057Homeodomain-like
PfamPF000466.3E-54973IPR001356Homeobox domain
SuperFamilySSF466896.84E-55178IPR009057Homeodomain-like
CDDcd000860.002575372No hitNo description
PROSITE profilePS500718.5035480IPR001356Homeobox domain
Gene3DG3DSA:1.10.238.107.4E-4154198IPR011992EF-hand domain pair
SuperFamilySSF474731.58E-5157201IPR011992EF-hand domain pair
PROSITE profilePS5022211.501168203IPR002048EF-hand domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MVDKPENTVT GGGNQASSRA QFVFEKFSIC FEKFSKNYIR MKPYLQIGSS SWKQLAQQVD  60
LSARQVEAWF QNTHVQITHM FMLMLTPHRF LGSSDTSSSS SSPRLATALL QHDDCSAKDD  120
GVQDPMAGIV RLTSCNVNEL EYLRAEDMKE QPYEANVEVG SLATSINVPI VKLKKVFDLF  180
DTKHNGILRF EDFAQLFITV AVPPRLAMLD QHEVVHYCGG AAAAPALALA TKRPTEGVPG  240
LGKVPNMLYA SAITLDIVLV HKSRQVIHGS VDSVAAHVRS QASCTR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G381748
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G381748_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554314e-36EU955431.1 Zea mays clone 1531862 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGRMZM2G381748_P010.0(Zea mays)