PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G381441_P01
Common NameEREB58, LOC100384381
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 285aa    MW: 30759.4 Da    PI: 9.946
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G381441_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-18126177256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr ++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++ge
  GRMZM2G381441_P01 126 PYRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDSAEAAALAYDQAAFAMRGE 177
                        59*******.**********44465..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.0E-30126185IPR001471AP2/ERF domain
SMARTSM003803.3E-37126190IPR001471AP2/ERF domain
PROSITE profilePS5103223.024126184IPR001471AP2/ERF domain
CDDcd000182.76E-18127185No hitNo description
SuperFamilySSF541713.86E-22127186IPR016177DNA-binding domain
PRINTSPR003675.0E-10127138IPR001471AP2/ERF domain
PfamPF008473.7E-13127177IPR001471AP2/ERF domain
PRINTSPR003675.0E-10150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVSSTSHSQN SNSSPSPLHL STGIVGFLAR RAAMTRQPSS FQFHQPRVAV PPLDSPGSSV  60
DSSAPTWVQQ QQRAPPAPVL AFDGNDTDEM ALLDMITRQV QGQGQEGATS KQEEAERSLG  120
AGGGRPYRGV RKRPWGKFAA EIRDSTRNGV RVWLGTFDSA EAAALAYDQA AFAMRGEAAV  180
LNFPVERVRQ SLEGMGMGMG MPIPGSGSAS ASPVVALKRR HSMRMRRPAS RNRKAKTATR  240
SEVMELEDLG ADYLEELLGA TATEAEEQTM SHSSSSSWHR SHHSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-27113186274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G381441
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G381441_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699800.0BT069980.1 Zea mays full-length cDNA clone ZM_BFb0349F03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170395.10.0uncharacterized protein LOC100384381
SwissprotA0A3Q7I5Y97e-54ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A317Y9P20.0A0A317Y9P2_MAIZE; Ethylene-responsive transcription factor 1B
TrEMBLC0PNW10.0C0PNW1_MAIZE; Ethylene-responsive transcription factor 1B
STRINGGRMZM2G381441_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-34ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]