PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G381378_P01
Common NameLOC103633564
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 338aa    MW: 34667.4 Da    PI: 8.4802
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G381378_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.14.3e-24131193159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 
                        ldDg +WrKYGqK +++s++prsYYrCt++   gC+++++v+ s+ +p+  ++i Y g+H+++
  GRMZM2G381378_P01 131 LDDGNSWRKYGQKRIQESPNPRSYYRCTHRadqGCRATRQVQASDANPSSeFIISYFGQHTCR 193
                        58***************************99999***********999754899******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-25118195IPR003657WRKY domain
SuperFamilySSF1182909.29E-23124195IPR003657WRKY domain
PROSITE profilePS5081120.392126195IPR003657WRKY domain
SMARTSM007744.2E-32131194IPR003657WRKY domain
PfamPF031065.3E-23132193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0025142anatomyleaf tip
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MASSAGGGLR SPAATAAPRV VMDSLIEVRE GATRLQTMLL EESPTPSIAA AAAAAGATSE  60
VRQTLDGMMS SLSSAMSALD TTGGGGGGQG QQGRRRKRGG AAAARSGPLR RSSNRRRSHS  120
PFVNTVTAST LDDGNSWRKY GQKRIQESPN PRSYYRCTHR ADQGCRATRQ VQASDANPSS  180
EFIISYFGQH TCRDPSTIPL VIPDDTAPPP PDCANLISFG GSTVVGGGAS PSANTTTTVP  240
TTMLSRFGYS SSLPTQTQAQ AQLAAAVVGP PGTTMTASWA TVGSAPAEYW PGGTTSDMAC  300
GPAGTASFPS SPSSLGFMTG SPFGNAGDDD LFLFGFDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-24124193169OsWRKY45
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G381378
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G381378_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653472.10.0probable WRKY transcription factor 70
TrEMBLA0A1D6IMW00.0A0A1D6IMW0_MAIZE; Putative WRKY transcription factor 30
STRINGGRMZM2G381378_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.18e-23WRKY DNA-binding protein 46