PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G380515_P01 | ||||||||
Common Name | pco068737, ZEAMMB73_981121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 201aa MW: 21919.9 Da PI: 9.081 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.5e-05 | 172 | 194 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F + +Lk+H+++H GRMZM2G380515_P01 172 HRCQECGRCFQKPAHLKQHMQSH 194 79*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.51E-5 | 124 | 194 | No hit | No description |
SMART | SM00355 | 22 | 126 | 148 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 170 | 197 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.012 | 172 | 194 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.653 | 172 | 199 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 174 | 196 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MHGGTLELHP FLAPAFRRTT SLTTGAAAHT AAHCTPSVPR PRSALSARPP VARDARRTAP 60 SLLAAGDGTG GPLLGCAQAA RARSTPASVH LRQALLRTST HRMCSEVHVE GDASVGQKGC 120 KDIRRYKCEF CTVVRSKKCL IQAHMVAHHK DELDKSEIYN SDGEKIVHEQ EHRCQECGRC 180 FQKPAHLKQH MQSHSHEGID S |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.66947 | 0.0 | ear| meristem| ovary| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G380515 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G380515_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU952156 | 0.0 | EU952156.1 Zea mays clone 1213665 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008654475.1 | 1e-139 | uncharacterized protein LOC100216772 isoform X2 | ||||
TrEMBL | K7V1N9 | 1e-138 | K7V1N9_MAIZE; Pentatricopeptide repeat-containing protein | ||||
STRING | GRMZM2G380515_P02 | 1e-138 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 4e-16 | transcription factor IIIA |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G380515_P01 |