PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G379652_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 329aa    MW: 35072.3 Da    PI: 6.3384
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G379652_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.1e-17179225554
                AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                        GVr+++ +g+++AeIrd + ng  +r+++g+f+t+e Aa a+++a+ +++
  GRMZM2G379652_P01 179 GVRRRP-WGKFAAEIRDSTRNG--QRVWIGTFDTPEAAALAYDQAAYSMR 225
                        9*****.**********44465..***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.837176234IPR001471AP2/ERF domain
PRINTSPR003673.9E-7177188IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-20178236IPR016177DNA-binding domain
PfamPF008471.9E-12179225IPR001471AP2/ERF domain
SMARTSM003807.8E-28179240IPR001471AP2/ERF domain
CDDcd000184.75E-14179235No hitNo description
Gene3DG3DSA:3.30.730.102.3E-26179235IPR001471AP2/ERF domain
PRINTSPR003673.9E-7200216IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006354anatomyear floret
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0001007developmental stagepollen development stage
PO:0007016developmental stagewhole plant flowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEPQFCSSYY YGHAGGAAYA HSDSSHYGLR RYDDDSVVVD SHCYSSSTMA SSGFVQQAAS  60
SAYYYYDPTA YSSDHHQHQQ QHPSSSSTAW ASSPSGATTP SSSHHQQQLL RFGGGAVDEY  120
YQEDGMGAVG MDQSSAHMVM GAASSTSSGA SSTTNTPDYL LLQEEEAAAG GGGDAPLIGV  180
RRRPWGKFAA EIRDSTRNGQ RVWIGTFDTP EAAALAYDQA AYSMRSTAAV LNFPVEHVQA  240
SLRALGLSVD AGGSPVLALK RRHCIRKRLP KNKTAAGKEQ QTKVVLAATA SSRRGHGHAE  300
QKQAASCGVL ELEDLGADYL EELLALSDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-251792411779Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G379652
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G379652_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278831e-163KJ727883.1 Zea mays clone pUT5976 AP2-EREBP transcription factor (EREB166) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020397068.10.0ethylene-responsive transcription factor ABR1
TrEMBLA0A1D6HV360.0A0A1D6HV36_MAIZE; Ethylene-responsive transcription factor 1B
TrEMBLA0A3L6DYU10.0A0A3L6DYU1_MAIZE; Ethylene-responsive transcription factor 1B
STRINGGRMZM2G379652_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-36ethylene response factor 1