PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G379608_P01 | ||||||||
Common Name | Zm.137096 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 264aa MW: 29987.8 Da PI: 6.8905 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.8 | 2.2e-32 | 11 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk....s 80 lp+G++F+P+d+el+++ ++k+ ++ ++++ ++e +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r ++ + GRMZM2G379608_P01 11 LPKGVKFDPSDQELIWHLMAKH-GKSGikphpfIDEFIPtVEEDeGICYTHPQKLP-GVKQNGSVSHFFHRTFKAYNTGTRKRRRINtddaD 100 799************7666554.44443555442322222333336**********.667778899*****************964434667 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+k+vl+ +g++ g+kk++v+y + k+ekt+Wv+h+y+l GRMZM2G379608_P01 101 VRWHKTGKTKPVLV-DGKHLGCKKIMVLYisPLKGGKAEKTNWVIHQYHL 149 89************.999***********6523777778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.68E-36 | 3 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.813 | 11 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-14 | 12 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MSQVVHQWPG LPKGVKFDPS DQELIWHLMA KHGKSGIKPH PFIDEFIPTV EEDEGICYTH 60 PQKLPGVKQN GSVSHFFHRT FKAYNTGTRK RRRINTDDAD VRWHKTGKTK PVLVDGKHLG 120 CKKIMVLYIS PLKGGKAEKT NWVIHQYHLG AGEDERDGEY VVSKLFFQQQ FKPGDKNAQE 180 LTTSDDLESM AAESNLPDFT TLPTDKHVGT VQEVVHNPEH NLYQLNRNCE ISIEETVVLP 240 PSVKTIKDGD NLQSQDQKLW EGDS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 92 | RKRRR |
2 | 89 | 93 | KRRRI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.20269 | 0.0 | meristem| ovary| pollen| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G379608 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G379608_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055862 | 0.0 | BT055862.1 Zea mays full-length cDNA clone ZM_BFb0341H11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001348999.1 | 0.0 | uncharacterized protein LOC100280252 | ||||
Swissprot | Q6NQK2 | 4e-86 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1D6LWF7 | 0.0 | A0A1D6LWF7_MAIZE; NAC domain-containing protein 8 | ||||
TrEMBL | A0A1D6LWG7 | 0.0 | A0A1D6LWG7_MAIZE; NAC domain-containing protein 8 | ||||
STRING | GRMZM2G078954_P01 | 0.0 | (Zea mays) | ||||
STRING | GRMZM2G379608_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 | Representative plant | OGRP525 | 15 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 2e-88 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G379608_P01 |