PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G379179_P01
Common NameLOC100279405, THX8
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 319aa    MW: 35874 Da    PI: 5.5544
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G379179_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix606e-1920106286
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                        W++ e+ +Li+a++e++++lrrg+lk+++Weev++ +             +++ +qC++k+e+l+kry+ + ++         s +pyf+++
  GRMZM2G379179_P01  20 WSHVETTHLIDAYEERWTALRRGQLKAHQWEEVAAEVaarcaatpGVVAQRKTGTQCRHKLEKLRKRYRTEGARPVT------SLWPYFRRM 105
                        *************************************999997654555578*****************98877764......68******* PP

           trihelix  86 e 86 
                        +
  GRMZM2G379179_P01 106 D 106
                        8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.0E-2018108No hitNo description
SMARTSM005955.7E-627113IPR006578MADF domain
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0004006anatomymesophyll cell
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAEEPPPPPL ARKSAPAQPW SHVETTHLID AYEERWTALR RGQLKAHQWE EVAAEVAARC  60
AATPGVVAQR KTGTQCRHKL EKLRKRYRTE GARPVTSLWP YFRRMDRLER GPLAVASSAY  120
PAATGSPPAA DGDEEGEEEE EEVEEEEEEE DVQEENEEEE ELAPRNNNTR SINGIIREFG  180
TGLAPRHPQL QLHPPPPSIT PSIAPPRKRV AYEAFQAKAA AAAVKAKDDE EEAMEMARRR  240
GSSGRPVAQL SAVLRDFGEG VMRLERRRME VQWEIERGWQ EADARHARML QDAQRQLRDT  300
VAGACALPPK KARRDHGDS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1008860.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G379179
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G379179_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0404530.0BT040453.1 Zea mays full-length cDNA clone ZM_BFc0095C18 mRNA, complete cds.
GenBankEU9543250.0EU954325.1 Zea mays clone 1462507 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001145889.20.0uncharacterized protein LOC100279405
TrEMBLA0A317YHQ90.0A0A317YHQ9_MAIZE; Uncharacterized protein
TrEMBLB4FTL50.0B4FTL5_MAIZE; Homeodomain-like superfamily protein
STRINGGRMZM2G379179_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933
Representative plantOGRP1302445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.19e-19Trihelix family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]