PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G379167_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 402aa    MW: 44260.8 Da    PI: 7.0541
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G379167_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.21e-24245289145
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                        kpr+rWtpeLHe+Fv+av++LGGsekAtPk++ ++mkv+gLt++h
  GRMZM2G379167_P01 245 KPRMRWTPELHECFVDAVNKLGGSEKATPKAVQKVMKVDGLTIYH 289
                        79******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-21243289IPR009057Homeodomain-like
SuperFamilySSF466898.24E-10244289IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-16245288IPR006447Myb domain, plants
PfamPF002495.5E-6247287IPR001005SANT/Myb domain
PfamPF143795.6E-15329369IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGITCSHTST MNRLHSGRVP PCLSSAITPV PAFSEASFPS FTEQRSSFAE RKLPVSSVAS  60
IGTSMAAYDT MSTHMLASNF TNESPNRQLC SGSYVTEPSD PDTPLLATHS SLMADSTPLF  120
VDFSEVSEHI CLNQGQLLGL FDYPASVDFY KSKNMTIFGQ QIQDTITVDP NTHLTPQNEL  180
FSGSSMQLQK TVGSAESVLK TVDARSATPQ SYLYCHTESE RSVPEPFNCD KLGADSLPFS  240
NTAPKPRMRW TPELHECFVD AVNKLGGSEK ATPKAVQKVM KVDGLTIYHK HRIVQHRSAG  300
VPGRRGSHTE VDDDSIPQSK GEGGVEGGLV SQIGLQKQLH EQLEIQRRLQ LQVEEHNKYL  360
ETVIAKQNES LKKLRALRGF RDRVRRVLQD SEAPGVRAHC AQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-19245299257Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-19245299257Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-19245299156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-19245299156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-19245299156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-19245299156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-19245299257Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-19245299257Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-19245299257Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-19245299257Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-19245299257Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-19245299257Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G379167
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G379167_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7712212e-84AY771221.1 Zea mays RFLP probe php10017 (CBM 5.09) genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646416.10.0protein PHOSPHATE STARVATION RESPONSE 1
RefseqXP_020394330.10.0protein PHOSPHATE STARVATION RESPONSE 1
TrEMBLA0A1D6HP800.0A0A1D6HP80_MAIZE; Uncharacterized protein
STRINGGRMZM2G379167_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54942526
Representative plantOGRP1611433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.14e-23phosphate starvation response 1