PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G379005_P02
Common NameLOC100280196, ZEAMMB73_322379
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 405aa    MW: 42279.2 Da    PI: 5.2691
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G379005_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15e-18322355134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  GRMZM2G379005_P02 322 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 355
                        *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.09E-14314378No hitNo description
PROSITE profilePS5011411.055316352IPR000679Zinc finger, GATA-type
SMARTSM004013.5E-16316366IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.3E-14320353IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.75E-14321378No hitNo description
PfamPF003201.1E-15322355IPR000679Zinc finger, GATA-type
PROSITE patternPS003440322347IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0004006anatomymesophyll cell
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MMREQSLLEA TCGDLFDHID DLLDFPKEDS AADVLLLDAP APGSPLSSAR IIDVGRAGSA  60
PAPPALAPSL PAQQDTTAFF AAAGPDVFDP RDVGAHLGSC DDIDMDMDMA QLEWLSGLFD  120
DASIPHEPAF PGAAPIIKSS ALAAGALLPP DKMEDALLFR SSSPISVLEH GSFNNANGGG  180
GGCSASSESS SASSSSESFS GSGSGSGEGH AWSAPVSPPP VLVIPARARS KRSRPSAFTR  240
AGAEAPTILV PTPMYSSGPS HSDPESIAES SPHPAPPMKK KKKAKKPPAP PAPASSDDND  300
GDADYEEGGE RAEPQGGAVR RCTHCQIEKT PQWRAGPLGP KTLCNACGVR YKSGRLFPEY  360
RPAASPTFVP SIHSNSHKKV VEMRQKAVRS GDPSCDLLQF IRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.679730.0endosperm| glume| meristem| ovary| pericarp| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G379005
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G379005_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670670.0BT067067.1 Zea mays full-length cDNA clone ZM_BFb0175B18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146600.10.0uncharacterized protein LOC100280196
RefseqXP_008677139.10.0putative GATA transcription factor family protein isoform X1
RefseqXP_008677140.10.0putative GATA transcription factor family protein isoform X1
RefseqXP_020407097.10.0putative GATA transcription factor family protein isoform X1
TrEMBLC0PFJ80.0C0PFJ8_MAIZE; GATA transcription factor 8
STRINGGRMZM2G379005_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.24e-37GATA family protein