PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G378653_P02 | ||||||||
Common Name | LOC100273300, ZEAMMB73_992623 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 372aa MW: 39181.3 Da PI: 10.0786 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.5 | 5.7e-09 | 203 | 250 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++e L+el+P +s k a +L + +++++sLq GRMZM2G378653_P02 203 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 250 8*************************94....22445556666666666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.4E-15 | 197 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.06E-10 | 197 | 254 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-14 | 199 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.627 | 199 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-6 | 203 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-8 | 205 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MAPLSPTPAS ASAPVSSSPR SLVPDASAAP MRPASPPQEL PAAGGEIQAA LAPANASTAG 60 ARGGGGSFTA LLGLPTSQAM ELLLPRTTPP ALATAPAPTF PSDPHLVDRA ARLSTFAPPS 120 PSPSSTSPAR PLPAAANAGK RKADPVDRAS KRRRTLALIA PWPQGKAAKK GKTAEEKLAG 180 GDGDDEKPAY VHVRARRGQA TDSHSLAERA RREKINARME LLKELVPGCS KVSGTALVLD 240 EIINHVQSLQ RQVEYLSMRL AAVNPRVDFG GLDSFLTTEC GRIAGFNCKN GIDLEQVTWP 300 EMGVHGARQL MQLQQQFWHG DLTHPHQVAS QWEKRGDGHP PVFSNSSPSL FGYDLTSSGA 360 QQTPASKLKT EL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 153 | KRKADPVDRASKRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.18864 | 0.0 | meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G378653 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G378653_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062747 | 0.0 | BT062747.1 Zea mays full-length cDNA clone ZM_BFb0340N22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001347160.1 | 0.0 | uncharacterized protein LOC100273300 | ||||
Swissprot | Q8VZ02 | 3e-64 | BH048_ARATH; Transcription factor bHLH48 | ||||
TrEMBL | A0A1D6P4V3 | 0.0 | A0A1D6P4V3_MAIZE; Putative HLH DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G378653_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6932 | 27 | 35 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42300.1 | 1e-51 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G378653_P02 |
Publications ? help Back to Top | |||
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