PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G378653_P01 | ||||||||
Common Name | LOC100273300, ZEAMMB73_992623 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 359aa MW: 37621.5 Da PI: 9.5015 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.6 | 5.4e-09 | 190 | 237 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++e L+el+P +s k a +L + +++++sLq GRMZM2G378653_P01 190 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 237 8*************************94....22445556666666666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.78E-10 | 184 | 241 | No hit | No description |
SuperFamily | SSF47459 | 3.14E-15 | 184 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.627 | 186 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-14 | 186 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-6 | 190 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-8 | 192 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MAPLSPTPAS ASAPVSSSPR SLVPDASAAP MRPASPPQEL PAAGGEIQAA LAPANASTAG 60 ARGGGGSFTA LLGLPTSQAM ELLLPRTTPP ALATAPAPTF PSDPHLVDRA ARLSTFAPPS 120 PSPSSTSPAR PLPAAANAGK RKADPVDRAS KGKAAKKGKT AEEKLAGGDG DDEKPAYVHV 180 RARRGQATDS HSLAERARRE KINARMELLK ELVPGCSKVS GTALVLDEII NHVQSLQRQV 240 EYLSMRLAAV NPRVDFGGLD SFLTTECGRI AGFNCKNGID LEQVTWPEMG VHGARQLMQL 300 QQQFWHGDLT HPHQVASQWE KRGDGHPPVF SNSSPSLFGY DLTSSGAQQT PASKLKTEL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.18864 | 0.0 | meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G378653 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G378653_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040729 | 0.0 | BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001347160.1 | 0.0 | uncharacterized protein LOC100273300 | ||||
Swissprot | Q8VZ02 | 7e-65 | BH048_ARATH; Transcription factor bHLH48 | ||||
TrEMBL | A0A1D6P4V3 | 0.0 | A0A1D6P4V3_MAIZE; Putative HLH DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G378653_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42300.1 | 6e-52 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G378653_P01 |
Entrez Gene | 100273300 |
Publications ? help Back to Top | |||
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