PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G378580_P06
Common NameLOC100274564, ZEAMMB73_247628
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 751aa    MW: 82225 Da    PI: 8.422
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G378580_P06genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23148249199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++ +++a+e+        +++  +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   
  GRMZM2G378580_P06 148 FCKTLTASDTSTHGGFSVLRRHADEClppldmtRQPP--TQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL-- 235
                        99****************************9754333..459************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        + +++el+v+v+r+
  GRMZM2G378580_P06 236 RGDSGELRVGVRRA 249
                        448999*****996 PP
2Auxin_resp104.41.4e-34274356183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha++t+++F+v+Y+Pr+s++eFvv++++++++lk+++ +GmRfkm+fe+e+++e+r++Gt+vg  d d+  W +SkWr Lk
  GRMZM2G378580_P06 274 AWHAVNTGTMFTVYYKPRTSPAEFVVPCDRYMESLKRNYPIGMRFKMRFEGEEAPEQRFTGTIVGNVDPDQAGWAESKWRYLK 356
                        89******************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-41142263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-40142277IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-21146248No hitNo description
PfamPF023622.1E-21148249IPR003340B3 DNA binding domain
PROSITE profilePS5086311.758148250IPR003340B3 DNA binding domain
SMARTSM010194.0E-23148250IPR003340B3 DNA binding domain
PfamPF065073.7E-32274356IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MTSSAAAAAA AAQVAGGGGG GEGDAAAAAR GGGGTEDGMY TELWNLCAGP LVTVPRVGDK  60
VYYFPQGHIE QVEASTNQVA EQHMQFYDLP WKILCEVMNV ELKAEPDNDE VYAQLTLLPE  120
SKPEENGSSE EMPASPPAAL ARPRVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMT  180
RQPPTQELVA KDLHGVEWRF RHIFRGQPRR HLLQSGWSVF VSAKRLVAGD AFIFLRGDSG  240
ELRVGVRRAM RQQANVPSSV ISSHSMHLGV LATAWHAVNT GTMFTVYYKP RTSPAEFVVP  300
CDRYMESLKR NYPIGMRFKM RFEGEEAPEQ RFTGTIVGNV DPDQAGWAES KWRYLKVRWD  360
EASSIPRPER VSPWQIEPAV SPPPINPLPV HRPKRPRSNA VASLPESSAP TKEAAPKVTL  420
ETQQHALQRP LQTQDNVAPK SVFGDNSELD SAHKSSLRPS GFDLDKSTIG MQRKLGSDIW  480
MRMNRPDGYS EMLSGYQPPN EGARNSQGFC SLPDQIAAGR PNFWHTVNAH YQDQQGNHNL  540
FPGSWSMMPS STGFGMNRQS YPMIQEVGGM SQSCTNTKFG NGVYAALPGR GIDRYPSGWF  600
GHTTPGGRVD DAQPRVIKPQ PLVLAHGEAL KMKGNSCKLF GIHLDSPAKS EPLKSPPSVA  660
TPAAEKWMAD GIDADKSPEP HKTPKQLGAT QVDPVPERCP QASRGTQCKS QGGSTRSCKK  720
VCFFLSLLLC QASPMFVCNV PRLQEKLAKP L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-170273787354Auxin response factor 1
4ldw_A1e-170273787354Auxin response factor 1
4ldw_B1e-170273787354Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.29030.0aerial organ| ear| embryo| endosperm| meristem| pericarp| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G378580
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G378580_P06
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0660820.0BT066082.1 Zea mays full-length cDNA clone ZM_BFb0285O01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307052.10.0auxin response factor
SwissprotA2ZET60.0ARFW_ORYSI; Auxin response factor 23
TrEMBLK7U0850.0K7U085_MAIZE; Auxin response factor
STRINGGRMZM2G378580_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2