PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G378580_P05 | ||||||||
Common Name | LOC100274564, ZEAMMB73_247628 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ARF | ||||||||
Protein Properties | Length: 817aa MW: 89568.2 Da PI: 7.4366 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.2 | 1.6e-23 | 181 | 282 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++ +++a+e+ +++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F GRMZM2G378580_P05 181 FCKTLTASDTSTHGGFSVLRRHADEClppldmtRQPP--TQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL-- 268 99****************************9754333..459************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + +++el+v+v+r+ GRMZM2G378580_P05 269 RGDSGELRVGVRRA 282 448999*****996 PP | |||||||
2 | Auxin_resp | 104.2 | 1.6e-34 | 307 | 389 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F+v+Y+Pr+s++eFvv++++++++lk+++ +GmRfkm+fe+e+++e+r++Gt+vg d d+ W +SkWr Lk GRMZM2G378580_P05 307 AWHAVNTGTMFTVYYKPRTSPAEFVVPCDRYMESLKRNYPIGMRFKMRFEGEEAPEQRFTGTIVGNVDPDQAGWAESKWRYLK 389 89******************************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-40 | 175 | 310 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-41 | 175 | 296 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.93E-21 | 179 | 281 | No hit | No description |
PROSITE profile | PS50863 | 11.758 | 181 | 283 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-21 | 181 | 282 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.0E-23 | 181 | 283 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.2E-32 | 307 | 389 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.5E-6 | 747 | 817 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 18.707 | 749 | 817 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.18E-7 | 750 | 817 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 817 aa Download sequence Send to blast |
MTSSAAAAAA AAQVAGGGGG GEGDAAAAAR GESCSLGGRL RLSLFGGFLT WVWLGLCCSL 60 LLAGGGGTED GMYTELWNLC AGPLVTVPRV GDKVYYFPQG HIEQVEASTN QVAEQHMQFY 120 DLPWKILCEV MNVELKAEPD NDEVYAQLTL LPESKPEENG SSEEMPASPP AALARPRVHS 180 FCKTLTASDT STHGGFSVLR RHADECLPPL DMTRQPPTQE LVAKDLHGVE WRFRHIFRGQ 240 PRRHLLQSGW SVFVSAKRLV AGDAFIFLRG DSGELRVGVR RAMRQQANVP SSVISSHSMH 300 LGVLATAWHA VNTGTMFTVY YKPRTSPAEF VVPCDRYMES LKRNYPIGMR FKMRFEGEEA 360 PEQRFTGTIV GNVDPDQAGW AESKWRYLKV RWDEASSIPR PERVSPWQIE PAVSPPPINP 420 LPVHRPKRPR SNAVASLPES SAPTKEAAPK VTLETQQHAL QRPLQTQDNV APKSVFGDNS 480 ELDSAHKSSL RPSGFDLDKS TIGMQRKLGS DIWMRMNRPD GYSEMLSGYQ PPNEGARNSQ 540 GFCSLPDQIA AGRPNFWHTV NAHYQDQQGN HNLFPGSWSM MPSSTGFGMN RQSYPMIQEV 600 GGMSQSCTNT KFGNGVYAAL PGRGIDRYPS GWFGHTTPGG RVDDAQPRVI KPQPLVLAHG 660 EALKMKGNSC KLFGIHLDSP AKSEPLKSPP SVATPAAEKW MADGIDADKS PEPHKTPKQL 720 GATQVDPVPE RCPQASRGTQ CKSQGGSTRS CKKVHKQGMA LGRSVDLTKF NGYTELVAEL 780 DEMFDFNGEL KGCSKEWMVV YTDYEGDMML VGDDPWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-169 | 65 | 411 | 12 | 354 | Auxin response factor 1 |
4ldw_A | 1e-169 | 65 | 411 | 12 | 354 | Auxin response factor 1 |
4ldw_B | 1e-169 | 65 | 411 | 12 | 354 | Auxin response factor 1 |
4ldx_A | 1e-169 | 65 | 411 | 12 | 354 | Auxin response factor 1 |
4ldx_B | 1e-169 | 65 | 411 | 12 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.2903 | 0.0 | aerial organ| ear| embryo| endosperm| meristem| pericarp| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G378580 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G378580_P05 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066082 | 0.0 | BT066082.1 Zea mays full-length cDNA clone ZM_BFb0285O01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001307052.1 | 0.0 | auxin response factor | ||||
Swissprot | A2ZET6 | 0.0 | ARFW_ORYSI; Auxin response factor 23 | ||||
TrEMBL | K7U085 | 0.0 | K7U085_MAIZE; Auxin response factor | ||||
STRING | GRMZM2G378580_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G378580_P05 |