PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G378580_P01
Common NameARF13, LOC100274564, ZEAMMB73_247628
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 850aa    MW: 93150.7 Da    PI: 7.0137
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G378580_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.7e-23149250199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++ +++a+e+        +++  +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   
  GRMZM2G378580_P01 149 FCKTLTASDTSTHGGFSVLRRHADEClppldmtRQPP--TQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL-- 236
                        99****************************9754333..459************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        + +++el+v+v+r+
  GRMZM2G378580_P01 237 RGDSGELRVGVRRA 250
                        448999*****996 PP
2Auxin_resp104.11.6e-34275357183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha++t+++F+v+Y+Pr+s++eFvv++++++++lk+++ +GmRfkm+fe+e+++e+r++Gt+vg  d d+  W +SkWr Lk
  GRMZM2G378580_P01 275 AWHAVNTGTMFTVYYKPRTSPAEFVVPCDRYMESLKRNYPIGMRFKMRFEGEEAPEQRFTGTIVGNVDPDQAGWAESKWRYLK 357
                        89******************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-41143264IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-40143278IPR015300DNA-binding pseudobarrel domain
CDDcd100172.09E-21147249No hitNo description
PfamPF023622.5E-21149250IPR003340B3 DNA binding domain
PROSITE profilePS5086311.758149251IPR003340B3 DNA binding domain
SMARTSM010194.0E-23149251IPR003340B3 DNA binding domain
PfamPF065074.4E-32275357IPR010525Auxin response factor
PfamPF023095.3E-10715800IPR033389AUX/IAA domain
PROSITE profilePS5174521.727717799IPR000270PB1 domain
SuperFamilySSF542772.88E-10718793No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MTSSAAAAAA AAQVAGGGGG GEGDAAAAAR GGGGTEDGMY TELWNLCAGP LVTVPRVGDK  60
VYYFPQGHIE QVEASTNQVA EQHMQFYDLP WKILCEVMNV ELKAEPDNDE VYAQLTLLPE  120
SKQPEENGSS EEMPASPPAA LARPRVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM  180
TRQPPTQELV AKDLHGVEWR FRHIFRGQPR RHLLQSGWSV FVSAKRLVAG DAFIFLRGDS  240
GELRVGVRRA MRQQANVPSS VISSHSMHLG VLATAWHAVN TGTMFTVYYK PRTSPAEFVV  300
PCDRYMESLK RNYPIGMRFK MRFEGEEAPE QRFTGTIVGN VDPDQAGWAE SKWRYLKVRW  360
DEASSIPRPE RVSPWQIEPA VSPPPINPLP VHRPKRPRSN AVASLPESSA PTKEAAPKVT  420
LETQQHALQR PLQTQDNVAP KSVFGDNSEL DSAHKSSLRP SGFDLDKSTI GMQRKLGSDI  480
WMRMNRPDGY SEMLSGYQPP NEGARNSQGF CSLPDQIAAG RPNFWHTVNA HYQDQQGNHN  540
LFPGSWSMMP SSTGFGMNRQ SYPMIQEVGG MSQSCTNTKF GNGVYAALPG RGIDRYPSGW  600
FGHTTPGGRV DDAQPRVIKP QPLVLAHGEA LKMKGNSCKL FGIHLDSPAK SEPLKSPPSV  660
ATPAAEKWMA DGIDADKSPE PHKTPKQLGA TQVDPVPERC PQASRGTQCK SQGGSTRSCK  720
KVHKQGMALG RSVDLTKFNG YTELVAELDE MFDFNGELKG CSKEWMVVYT DYEGDMMLVG  780
DDPWNEFCSM VHKIFVYTRE EVQRMNPGAL NSRPEDSGLA NSTERGSAST AAAREAPGYQ  840
SASSLNSDNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-170273797354Auxin response factor 1
4ldw_A1e-170273797354Auxin response factor 1
4ldw_B1e-170273797354Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.29030.0aerial organ| ear| embryo| endosperm| meristem| pericarp| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G378580
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G378580_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0660820.0BT066082.1 Zea mays full-length cDNA clone ZM_BFb0285O01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008676891.10.0auxin response factor isoform X1
SwissprotA2ZET60.0ARFW_ORYSI; Auxin response factor 23
TrEMBLD9HNU00.0D9HNU0_MAIZE; Auxin response factor
STRINGGRMZM2G378580_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2