PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G377217_P01 | ||||||||
Common Name | LOC103653860, ZEAMMB73_889400, Zm.83538 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 235aa MW: 25642.8 Da PI: 8.0156 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.4 | 1.1e-31 | 159 | 217 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +prsY+rCt+++C+vkk+ver ++d ++v +tYeg+H+h+ GRMZM2G377217_P01 159 LDDGYKWRKYGQKVVKNSLHPRSYFRCTHSNCRVKKRVERLSTDCRMVMTTYEGRHTHS 217 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-32 | 144 | 217 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.37E-28 | 151 | 217 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.254 | 154 | 216 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-37 | 159 | 218 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-24 | 160 | 216 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEGGQLGTCL PSFLVPDHYA FPLPLPPLQL PSSQPNNKPF QMPFDDVQEE AGNHAGMLSS 60 SDHCGLYPLQ SLPFGSSASG GAGAAACGGK PTAVGFMPSC SAVGAEEVCT SVAPTTNGCN 120 ESNSAWWKAS AAERGKMKVR RKMREPRFCF QTRSDVDVLD DGYKWRKYGQ KVVKNSLHPR 180 SYFRCTHSNC RVKKRVERLS TDCRMVMTTY EGRHTHSPCS DDASSGDHTD CFSSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-25 | 150 | 216 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 7e-25 | 150 | 216 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.83538 | 0.0 | ear |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G377217 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00618 | PBM | Transfer from AT2G44745 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G377217_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC191597 | 0.0 | KC191597.1 Miscanthus lutarioriparius zinc finger transcription factor WRKY12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001335044.1 | 1e-177 | probable WRKY transcription factor 12 | ||||
Swissprot | Q93WY4 | 2e-59 | WRK12_ARATH; Probable WRKY transcription factor 12 | ||||
TrEMBL | A0A3L6F4E1 | 1e-176 | A0A3L6F4E1_MAIZE; Putative WRKY transcription factor 12 | ||||
TrEMBL | K7UHL4 | 1e-176 | K7UHL4_MAIZE; Putative WRKY DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G377217_P01 | 1e-177 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 6e-61 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G377217_P01 |
Entrez Gene | 103653860 |
Publications ? help Back to Top | |||
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