PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G376684_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 343aa    MW: 38533.8 Da    PI: 4.7578
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G376684_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-0778120246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         ++  eE+e+  + +  +G++ W+  a++++ g t++++k++w++
  GRMZM2G376684_P01  78 EPFNVEEEEKTFKFHIWWGSK-WAMMASHLP-GSTDNEIKNYWNT 120
                        68899****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-85083IPR009057Homeodomain-like
SuperFamilySSF466894.01E-1357126IPR009057Homeodomain-like
PROSITE profilePS5129414.2672126IPR017930Myb domain
SMARTSM007175.0E-576124IPR001005SANT/Myb domain
CDDcd001672.05E-579122No hitNo description
Gene3DG3DSA:1.10.10.603.4E-1384121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MTVLRVDENP APNGEKSPLD DEYVSDDDEH VDDEDEETDS VGDYENPSRV QQNVRLNRCG  60
KSCCLRWTNH IRPNLKKEPF NVEEEEKTFK FHIWWGSKWA MMASHLPGST DNEIKNYWNT  120
RKRRKRRCGS PLHPEYMLSQ VTHKDMDCET PGESHGKKRS NECSKEKVAD VQELVDELIV  180
FEHLDYGKDI MFPTRPLKHH ASTGSVQIPG DIGKTLNYVM TKNQSMSVGS AIGNGYPVYG  240
GRLSTSGTIF SSIQMEIPSI QSSSYSPTFC APEHEGCSET QAPNLCSGSD VVFDPNQCYP  300
VASFSDLGIP DTPLTAGFLN DIALVLEEQF PPLHNQGQSE QQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-155812537104C-Myb DNA-Binding Domain
1msf_C6e-155812537104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126RKRRKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.808010.0shoot
Zm.809390.0aerial organ| cell culture| embryo| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G376684
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G376684_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419360.0BT041936.1 Zea mays full-length cDNA clone ZM_BFb0083A23 mRNA, complete cds.
GenBankBT0677570.0BT067757.1 Zea mays full-length cDNA clone ZM_BFc0153H03 mRNA, complete cds.
GenBankJX4699440.0JX469944.1 Zea mays subsp. mays clone UT3205 MYB-type transcription factor mRNA, partial cds.
GenBankKJ7268990.0KJ726899.1 Zea mays clone pUT3444 MYB transcription factor (MYB59) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141727.10.0uncharacterized LOC100273858
RefseqXP_008647571.10.0uncharacterized protein LOC100273858 isoform X1
TrEMBLA0A1D6LS940.0A0A1D6LS94_MAIZE; Transcription factor MYB104
STRINGGRMZM2G376684_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129022331
Representative plantOGRP1067739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.11e-31myb domain protein 65