PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G376061_P01 | ||||||||
Common Name | LOC103651033, Zm.131487 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 182aa MW: 19285.5 Da PI: 7.1148 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H GRMZM2G376061_P01 60 FECKTCSKRFPSFQALGGHRTSH 82 89**********99998888777 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.03E-6 | 57 | 84 | No hit | No description |
Pfam | PF13912 | 4.0E-12 | 59 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.429 | 60 | 87 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 60 | 82 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.1E-6 | 103 | 132 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 103 | 132 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 8.9E-11 | 104 | 129 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.4 | 105 | 127 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.05 | 105 | 132 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 107 | 127 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 182 aa Download sequence Send to blast |
MVMTLTRDEA EGSKDMQGVR AHAEELSTLS SAVAAGTDGT PRPPSSGAAA RRAMAAEGVF 60 ECKTCSKRFP SFQALGGHRT SHTRLQARTM LSDQAAAERD RARAHECAVC GLEFAMGQAL 120 GGHMRRHRGE APPPAAQPAD RDMPDLNLPP LDDGNGSADG QGPRRSEDDR GSSKPQLLNL 180 LV |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G376061 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G376061_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU971116 | 0.0 | EU971116.1 Zea mays clone 357761 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008674848.1 | 1e-129 | zinc finger protein ZAT9 | ||||
TrEMBL | A0A1D6N7K5 | 1e-127 | A0A1D6N7K5_MAIZE; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A3L6FP70 | 1e-127 | A0A3L6FP70_MAIZE; Zinc finger protein ZAT8 | ||||
STRING | GRMZM2G376061_P01 | 1e-128 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G46080.1 | 4e-23 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G376061_P01 |
Entrez Gene | 103651033 |