PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G375707_P01
Common NameMADS42, ZEAMMB73_558575, Zm.17006
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family M-type_MADS
Protein Properties Length: 468aa    MW: 50374 Da    PI: 8.2796
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G375707_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF481.6e-151360249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       +ie+ + r+ tf kRr g++K A+ LS+L++a+vav++ s++g++  +
  GRMZM2G375707_P01 13 FIEDGRDRSLTFFKRRSGLFKAASDLSTLTGARVAVVLESESGRFSSF 60
                       79******************************************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-12263IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.801464IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-8626IPR002100Transcription factor, MADS-box
CDDcd001203.96E-16763No hitNo description
SuperFamilySSF554551.96E-15873IPR002100Transcription factor, MADS-box
PfamPF003191.5E-171360IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-82641IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-84162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MMARRDRRSG VRFIEDGRDR SLTFFKRRSG LFKAASDLST LTGARVAVVL ESESGRFSSF  60
GTPEASPIVD AFLLGSAPTD LDTSEADKAS ITNLQNEVFQ LEKDKAMEDK RRKESLARSS  120
RKVQQASKVA RYVYGSVDDL DATELFEMYR ELSRVQQEIS DRLPTTLLHD ASKADAGGGR  180
GRLRDPSLLR PTWWRASAMP LPPLQQAATP PTKCPPWAPS QARFQFQQHP WAASSTSPPA  240
VLPRSSGSPL PSSAILPSPL APQNPSFLRH HHPLAPHTTP PTSAGVQFQA PRTPAPTEAQ  300
NPYTYYIRGI DIISGNSSHP SSLSPVMPSS SPTPHQQPSS LRAPPSDDSS PLSLSPRVSY  360
PLHVGSPYHQ QLPLSAQNHN SVQQPPPPPE SCAHVVGSPL IVHSHQVFYS NLSPDLNAEL  420
GSVDDGGAGA THADGGLGLS SPQQSDGFDG VTPNKSFSAG QSSGSGWW
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G375707
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G375707_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612910.0BT061291.1 Zea mays full-length cDNA clone ZM_BFb0131L22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001167759.10.0uncharacterized protein LOC100381450
TrEMBLA0A3L6DKB50.0A0A3L6DKB5_MAIZE; Serum response factor B
TrEMBLC0HG350.0C0HG35_MAIZE; Agamous-like MADS-box protein AGL62
STRINGGRMZM2G375707_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Representative plantOGRP9531413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.12e-11AGAMOUS-like 28