PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G371033_P01

Common Name

ZEAMMB73_408896, Zm.154232

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

SBP

Protein Properties

Length: 309aa MW: 33655.1 Da PI: 8.6373

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G371033_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.2	7.6e-41	15	91	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvC +hskap v+v+g++qrfCqqCsrfh l+efDe krsCr+rL++hn+rrrk+q+ GRMZM2G371033_P01 15 CSVQGCDADLSQCRDYHRRHKVCVAHSKAPFVTVAGQQQRFCQQCSRFHLLEEFDEVKRSCRKRLDGHNRRRRKPQP 91 **************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.1E-33	7	76	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.881	12	89	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.76E-39	13	93	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.4E-30	15	88	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
KRPRPGHAQQ AAPACSVQGC DADLSQCRDY HRRHKVCVAH SKAPFVTVAG QQQRFCQQCS 60 RFHLLEEFDE VKRSCRKRLD GHNRRRRKPQ PDPLSPAGLF GDHHHGGVTR FTSYPHRFTT 120 SIAKPEWGAV VKTETDAFQD QYYPAVHLNG AGAGALFHDK DRKHLPFLTN HNNGCQPFTV 180 TTTASSESSS KHSNGNCALS LLSDNPTPAQ AQTATIPTAQ PLVATASQYG RLPGGDDDDV 240 SLAGMSYMRV GDSRQASNLT TSSPGPATAA ATQQHLQYHH GYYYHVSGGE QGNNSPDGAA 300 IQALPFSSW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-26	15	88	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	88	KRSCRKRLDGHNRRRRKP

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G371033

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269\|PubMed:16861571}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G371033_P01

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK356077	8e-93	AK356077.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1029L02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001349186.1	0.0	SBP-transcription factor 18
Swissprot	Q0JGI1	4e-91	SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBL	A0A1D6G5U7	0.0	A0A1D6G5U7_MAIZE; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
STRING	GRMZM2G371033_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10456	30	38
Representative plant	OGRP97	17	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	4e-36	SBP family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G371033_P01

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]