PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G370896_P01
Common NameZEAMMB73_759935
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 286aa    MW: 31770.3 Da    PI: 6.0007
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G370896_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-13149193347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE++l++ + k +G g+W+ I+r +   Rt+ q+ s+ qky
  GRMZM2G370896_P01 149 PWTEEEHKLFLMGLKNYGRGDWRNISRNFVRSRTPTQVASHAQKY 193
                        7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.4352478IPR017877Myb-like domain
SMARTSM007176.0E-42880IPR001005SANT/Myb domain
SuperFamilySSF466897.9E-93077IPR009057Homeodomain-like
CDDcd001671.33E-53174No hitNo description
PROSITE profilePS5129417.503142198IPR017930Myb domain
SuperFamilySSF466894.16E-17144198IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-16145196IPR006447Myb domain, plants
SMARTSM007177.4E-11146196IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-11147192IPR009057Homeodomain-like
CDDcd001673.81E-10149194No hitNo description
PfamPF002495.2E-11149193IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MTELWMEVLP PYFAGQAGGW FLLDRRAGPG AWTLEENKMF ERALARVDWD APDRWERVAA  60
VLPRRTVADV AAHYDDLEVD VGSIEAGFVP FPRYGGCGGG TSQSAAGFTF EWDGDAGGTG  120
FNKRSCYVVG GGGKRDERGP DHERKKGIPW TEEEHKLFLM GLKNYGRGDW RNISRNFVRS  180
RTPTQVASHA QKYFIRLSSG GKDKRRSSIH DITTVNLPDD DDDGDDDDTG GGNPPVISEQ  240
LGVLVDSRPP PPHPYRHLLL PHPYGNVKLE PRHGGFLDDS VLMQSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-15321081187RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.989800.0meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G370896
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G370896_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542810.0BT054281.1 Zea mays full-length cDNA clone ZM_BFb0211P03 mRNA, complete cds.
GenBankBT0558020.0BT055802.1 Zea mays full-length cDNA clone ZM_BFb0203M07 mRNA, complete cds.
GenBankBT0666720.0BT066672.1 Zea mays full-length cDNA clone ZM_BFb0049J12 mRNA, complete cds.
GenBankHQ8587850.0HQ858785.1 Zea mays clone UT1771 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657607.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-76DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A3L6DPP81e-172A0A3L6DPP8_MAIZE; Transcription factor DIVARICATA
STRINGGRMZM2G370896_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-80MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]