PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G370425_P01
Common NameLOC103650455, Zm.130431
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 409aa    MW: 43773.8 Da    PI: 7.1362
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G370425_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.11.5e-31101154255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  GRMZM2G370425_P01 101 PRMRWTTALHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 154
                        9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-2898156IPR009057Homeodomain-like
SuperFamilySSF466891.79E-1598155IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-23101154IPR006447Myb domain, plants
PfamPF002493.4E-7102153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MITTTTTTMT AAPDLSLHIS PPSPPEPRLL LGLELDDDTA AEAAAATKKA DDAAAMREYN  60
NLQVQRRQLH QPSQTAGHGF KRGTSGSAAA GAGGRRSSRA PRMRWTTALH AHFVHAVELL  120
GGHERATPKS VLELMNVKDL TLAHVKSHLQ MYRTVKQQGA DRPCVAVAGH GHARDMVVLL  180
TTGVGEGDAG FVDDVSNSNS NSNNSVVVNN TVPAAFNNNH TDRLVCLCTC SRTPQSPGGR  240
EQQQQPAPAV DRRRDDAAAA AAACAWVVGR QVQHQRSCSE GVTKLQGLKV GDERVDRHHG  300
DDAIAAHRLV EDEARDDHAG SGGGFQQRRP SPNNTSGTVS SSEWLNQQHC SGVMSVRVLG  360
LPPATPPSLE MSLGRQGWQM DQQCGGEFEF DFEPSPPSAA KELTLLRCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-17102156357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-17102156357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-17102156357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-17102156357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G370425
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G370425_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9655070.0EU965507.1 Zea mays clone 286515 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674265.10.0uncharacterized protein LOC103650455 isoform X6
TrEMBLA0A1D6MVN90.0A0A1D6MVN9_MAIZE; Uncharacterized protein
STRINGGRMZM2G370425_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.22e-31G2-like family protein