PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G370332_P01
Common NameLOC100383874
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 300aa    MW: 32669.8 Da    PI: 6.2462
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G370332_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.6e-072502832154
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        k +yp+++++++L +++gL+ +q+ +WF N+R +
  GRMZM2G370332_P01 250 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 283
                        569*****************************87 PP
2ELK28.24.4e-10204225122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK++L+++Y+++L+++++E++
  GRMZM2G370332_P01 204 ELKNELKQGYKEKLVDIREEIM 225
                        9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-193983IPR005540KNOX1
PfamPF037901.4E-164279IPR005540KNOX1
SMARTSM012566.2E-2693148IPR005541KNOX2
PfamPF037914.4E-16101147IPR005541KNOX2
PfamPF037896.6E-7204225IPR005539ELK domain
SMARTSM011886.3E-4204225IPR005539ELK domain
PROSITE profilePS5121310.057204224IPR005539ELK domain
PROSITE profilePS5007111.548224287IPR001356Homeobox domain
SMARTSM003892.8E-10226291IPR001356Homeobox domain
SuperFamilySSF466899.41E-16226289IPR009057Homeodomain-like
CDDcd000861.88E-11227288No hitNo description
Gene3DG3DSA:1.10.10.601.4E-24231288IPR009057Homeodomain-like
PfamPF059208.1E-18244283IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSFHYPDHGL SMDAAAAAAA AAAASSPNPS GFSPGVGGER EKAAIAAHPL YERLLEAHVA  60
CLRVATPVDQ LPRIDAQIAA RPPPLAAAAG AAAAGGPSGG EELDLFMTHY VLLLCSFKEQ  120
LQQHVRVHAM EAVMGCWELE QSLQSLTGAS PGEGTGATMS DDEDNQVDSE ANMFDGNDGS  180
DGMGFGPLML TEGERSLVER VRQELKNELK QGYKEKLVDI REEIMRKRRA GKLPGDTASV  240
LKAWWQAHSK WPYPTEDDKA RLVQETGLQL KQINNWFINQ RKRNWHSNPT SSGEKTKKKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280299RKRNWHSNPTSSGEKTKKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.681350.0ear| leaf| meristem| ovary| pedicel| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G370332
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots, leaf blades, leaf sheaths and flowers. Isoform 2 is expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:12034492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G370332_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685100.0BT068510.1 Zea mays full-length cDNA clone ZM_BFb0231A20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169973.10.0putative knotted-like transcription factor family protein
SwissprotQ0E3C30.0KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A3L6ELG00.0A0A3L6ELG0_MAIZE; Homeobox protein knotted-1-like 2
TrEMBLC0PJP10.0C0PJP1_MAIZE; Knotted related homeobox6
STRINGGRMZM2G370332_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-144KNOTTED1-like homeobox gene 3